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Relevance to Autism

Two de novo loss-of-function (LoF) variants and a de novo missense variant in the RUNX1T1 gene have been identified in ASD probands from the Autism Sequencing Consortium, the SPARK cohort, and the Simons Simplex Collection (Satterstrom et al., 2020; Zhou et al., 2022). Transmission and de novo association (TADA) analysis of whole-exome and whole-genome sequencing data from the Autism Sequencing Consortium, the Simons Simplex Collection, the MSSNG cohort, and the SPARK cohort in Trost et al., 2022 identified RUNX1T1 as an ASD-associated gene with a false discovery rate (FDR) < 0.1.

Molecular Function

Transcriptional corepressor which facilitates transcriptional repression via its association with DNA-binding transcription factors and recruitment of other corepressors and histone-modifying enzymes.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1381R001 
 frameshift_variant 
 c.1229_1230del 
 p.Ala410ValfsTer13 
 De novo 
  
  
 GEN1381R002 
 missense_variant 
 c.1342T>A 
 p.Leu448Met 
 De novo 
  
 Simplex 
 GEN1381R003 
 stop_gained 
 c.727C>T 
 p.Leu243%3D 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
8
Duplication
 1
 
8
Deletion
 1
 
8
Duplication
 3
 
8
Duplication
 1
 
8
Deletion
 2
 

No Animal Model Data Available

 

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