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Relevance to Autism

Homozygous variants in the RSRC1 gene are responsible for a form of autosomal recessive intellectual disability [autosomal recessive intellectual developmental disorder-70 (MRT70); OMIM 618402); behavioral abnormalities including ASD or ADHD are frequently observed in affected individuals (Perez et al., 2018; Scala et al., 2020). Cross-trait meta-analysis of genome-wide studies on schizophrenia, bipolar disorder, autism spectrum disorder, ADHD, and depression identified an intronic variant in the RSRC1 gene (rs1589526) that reached genome-wide association with ASD following MTAG analysis (P-value 1.62E-08) (Wu et al., 2020); SNPs in the RSRC1 gene have previously been shown to reach genome-wide significance for association with depression (Wray et al., 2018; Li et al., 2018; Howard et al., 2019).

Molecular Function

This gene encodes a member of the serine and arginine rich-related protein family. The encoded protein is involved in both constitutive and alternative mRNA splicing.

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References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
RSRC1 mutation affects intellect and behaviour through aberrant splicing and transcription, downregulating IGFBP3
Autosomal recessive intellectual developmental dis
ADHD, autistic features
Positive Association
Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions
Depression
Positive Association
Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder
Depression
Positive Association
Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.
Depression
Positive Association
Multi-trait analysis for genome-wide association study of five psychiatric disorders
ASD
Support
GWAS signals revisited using human knockouts
Autosomal recessive intellectual developmental dis
Recent Recommendation
RSRC1 loss-of-function variants cause mild to moderate autosomal recessive intellectual disability
Autosomal recessive intellectual developmental dis
ASD, ADHD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1173R001a 
 stop_gained 
 c.205C>T 
 p.Arg69Ter 
 Familial 
 Both parents 
 Multiplex 
 GEN1173R002a 
 copy_number_loss 
  
  
 Familial 
 Both parents 
 Extended multiplex 
 GEN1173R003a 
 stop_gained 
 c.784C>T 
 p.Gln262Ter 
 Familial 
 Both parents 
 Extended multiplex 
 GEN1173R004a 
 copy_number_loss 
  
  
 Familial 
 Both parents 
 Multiplex 
 GEN1173R005a 
 stop_gained 
 c.250C>T 
 p.Arg84Ter 
 Familial 
 Both parents 
 Simplex 
 GEN1173R006a 
 frameshift_variant 
 c.320+79201_320+79207dup 
  
 Familial 
 Both parents 
 Simplex 
 GEN1173R007a 
 splice_site_variant 
 c.532-1G>A 
  
 Familial 
 Both parents 
 Multiplex 
 GEN1173R008a 
 initiator_codon_variant 
 c.3G>T 
 p.Met1? 
 Familial 
 Both parents 
 Multiplex 
 GEN1173R009a 
 stop_gained 
 c.268C>T 
 p.Arg90Ter 
 Familial 
 Both parents 
 Multiplex 

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN1173R001 
 intron_variant 
 rs1589526 
 c.320+14366C>A 
  
 46,350 ASD cases, 65,967 schizophrenia cases, 41,653 bipolar disorder cases, 55,374 ADHD cases, and 688,809 cases with depression 
 Discovery 
 GEN1173R002 
 intron_variant 
 rs7430565 
 c.409+34483G>A;c.583+34483G>A 
  
 135,458 MDD cases and 344,901 controls from 7 cohorts (PGC, deCODE, GenScotland, GERA, iPSYCH, UK Biobank, and 23andMe) 
 Discovery 
 GEN1173R003 
 intron_variant 
 rs1193510 
 c.357+14352A>G;c.531+14352A>G 
  
 90,150 MDD cases and 246,603 controls from three genome-wide association studies (23andMe, CONVERGE, and PGC) 
 Discovery 
 GEN1173R004 
 intron_variant 
 rs1095626 
 c.321-37866T>C;c.495-37866T>C 
  
 Meta-analysis cohort of 246,363 MDD cases and 561,190 controls (23andMe, PGC, and UKBiobank), followed by an independent replication cohort of 414,055 cases and 892,299 controls (23andMe) 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
3
Deletion
 3
 
3
Duplication
 1
 
3
Duplication
 1
 
3
Duplication
 3
 
3
Deletion
 1
 
3
Deletion
 8
 
3
Duplication
 2
 
3
Duplication
 1
 
3
Duplication
 1
 

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