HELP     Sign In
Search

Relevance to Autism

Pavinato et al., 2023 reported six individuals with heterozygous RPH3A missense variants: four individuals with intellectual disability and epileptic seizures, and two individuals with autism spectrum disorder and intellectual disability. Additional functional assessment in this report found that both the ID/epilepsy-associated p.Thr450Ser variant and the ASD/ID-associated p.Asn618Ser variant resulted in reduced synaptic localization of GluN2A, increased GluN2A-dependent NMDAR currents, and alteration of postsynaptic calcium levels in neuronal cultures. A de novo loss-of-function variant and multiple de novo missense variants in the RPH3A gene have also been reported in ASD probands (Iossifov et al., 2014; Yuen et al., 2017; Satterstrom et al., 2020; Trost et al., 2022; Wang et al., 2023). Avagliano Trezza et al., 2021 identified RPH3A as a ubiquitination target of UBE3A and demonstrated that an Angelman syndrome-associated missense variant in UBE3A abrogated the interaction with RPH3A.

Molecular Function

The protein encoded by this gene plays an essential role in docking and fusion steps of regulated exocytosis. At the presynaptic level, RPH3A is recruited by RAB3A to the synaptic vesicle membrane in a GTP-dependent manner where it modulates synaptic vesicle trafficking and calcium-triggered neurotransmitter release. In the post-synaptic compartment, RPH3A forms a ternary complex with GRIN2A and DLG4 and regulates NMDA receptor stability.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
ASD, ID, epilepsy/seizures
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD
Support
Angelman syndrome
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1407R001 
 missense_variant 
 c.289C>T 
 p.Arg97Cys 
 De novo 
  
 Simplex 
 GEN1407R002 
 stop_gained 
 c.1042C>T 
 p.Arg348Ter 
 De novo 
  
 Multiplex 
 GEN1407R003 
 missense_variant 
 c.686A>T 
 p.Tyr229Phe 
 De novo 
  
  
 GEN1407R004 
 missense_variant 
 c.1717C>T 
 p.Arg573Cys 
 De novo 
  
  
 GEN1407R005 
 missense_variant 
 c.938A>G 
 p.Gln313Arg 
 De novo 
  
  
 GEN1407R006 
 synonymous_variant 
 c.780C>T 
 p.Ser260%3D 
 De novo 
  
  
 GEN1407R007 
 missense_variant 
 c.1109G>C 
 p.Arg370Pro 
 De novo 
  
 Simplex 
 GEN1407R008 
 missense_variant 
 c.1853A>G 
 p.Asn618Ser 
 De novo 
  
 Simplex 
 GEN1407R009 
 missense_variant 
 c.219G>T 
 p.Gln73His 
 De novo 
  
 Simplex 
 GEN1407R010 
 missense_variant 
 c.1349C>G 
 p.Thr450Ser 
 De novo 
  
 Multiplex 
 GEN1407R011 
 missense_variant 
 c.626G>A 
 p.Arg209Lys 
 Unknown 
  
 Simplex 
 GEN1407R012 
 missense_variant 
 c.705G>T 
 p.Arg235Ser 
 Unknown 
  
 Simplex 
 GEN1407R013 
 missense_variant 
 c.1524G>C 
 p.Gln508His 
 Unknown 
 Not maternal 
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Duplication
 1
 
12
Deletion
 7
 

No Animal Model Data Available

No PIN Data Available
HELP
Copyright © 2017 MindSpec, Inc.