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Relevance to Autism

A de novo missense variant in the RORB gene was identified in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2014), while two de novo likely-gene disruptive variants in this gene were observed in ASD probands from the Autism Sequencing Consortium (Satterstrom et al., 2020). Subsequent TADA analysis of de novo variants from the Simons Simplex Collection and the Autism Sequencing Consortium and protein-truncating variants from iPSYCH in Satterstrom et al., 2020 identified RORB as a candidate gene with a false discovery rate (FDR) 0.01. A two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in Zhou et al., 2022 identified RORB as a gene reaching exome-wide significance (P < 2.5E-06). Mutations in the RORB gene are responsible for susceptibility to idiopathic generalized epilepsy-15 (EIG15; OMIM 618357); Rudolf et al., 2016 found that two individuals from a cohort of patients with RORB-associated epilepsy also presented with autism spectrum disorder. Boudry-Labis et al., 2013 had previously shown that RORB was one of four genes within the minimal region of overlap in 9q21.13 microdeletion syndrome, a disorder characterized by developmental delay, epilepsy, behavioral abnormalities (including autistic features), and dysmorphic features. Rorb-knockout mice were found to display motor, olfactory, behavioral, and circadian phenotypes (Masana et al., 2007).

Molecular Function

The protein encoded by this gene is a member of the NR1 subfamily of nuclear hormone receptors. It is a DNA-binding protein that can bind as a monomer or as a homodimer to hormone response elements upstream of several genes to enhance the expression of those genes. The encoded protein has been shown to interact with NM23-2, a nucleoside diphosphate kinase involved in organogenesis and differentiation, and to help regulate the expression of some genes involved in circadian rhythm.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Behavioral characterization and modulation of circadian rhythms by light and melatonin in C3H/HeN mice homozygous for the RORbeta knockout.
Support
Cortical RORĪ² is required for layer 4 transcriptional identity and barrel integrity
Support
ASD
Somatosensory behaviors
Support
Inherited RORB pathogenic variants: Overlap of photosensitive genetic generalized and occipital lobe epilepsy
Epilepsy/seizures
DD, ID, learning difficulties
Support
ASD
DD, ID, epilepsy/seizures
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Loss of function of the retinoid-related nuclear receptor (RORB) gene and epilepsy.
Susceptibility to idiopathic generalized epilepsy-
ASD
Support
A novel microdeletion syndrome at 9q21.13 characterised by mental retardation, speech delay, epilepsy and characteristic facial features.
9q21.13 microdeletion syndrome
Support
Integrating de novo and inherited variants in 42
ASD
Support
ROR induces barrel-like neuronal clusters in the developing neocortex.
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Recent Recommendation
DD, ID, epilepsy/seizures
ASD or autistic features, ADHD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1138R001 
 missense_variant 
 c.64T>G 
 p.Tyr22Asp 
 De novo 
  
 Simplex 
 GEN1138R002 
 stop_gained 
 c.196C>T 
 p.Arg66Ter 
 Familial 
 Maternal 
 Multi-generational 
 GEN1138R003 
 missense_variant 
 c.218T>C 
 p.Leu73Pro 
 De novo 
  
  
 GEN1138R004 
 inframe_deletion 
 c.1249_1251del 
 p.Thr417del 
 De novo 
  
  
 GEN1138R005 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1138R006 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN1138R007 
 translocation 
  
  
 De novo 
  
 Simplex 
 GEN1138R008 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN1138R009 
 stop_gained 
 c.1114C>T 
 p.Arg372Ter 
 De novo 
  
 Simplex 
 GEN1138R010 
 frameshift_variant 
 c.816_817dup 
 p.Val273AlafsTer9 
 De novo 
  
 Simplex 
 GEN1138R011 
 missense_variant 
 c.111C>G 
 p.Ser37Arg 
 Familial 
  
 Extended multiplex 
 GEN1138R012 
 missense_variant 
 c.777G>T 
 p.Trp259Cys 
 Familial 
 Paternal 
 Multiplex 
 GEN1138R013 
 frameshift_variant 
 c.96_237del 
 p.His32GlnfsTer6 
 Familial 
 Maternal 
 Simplex 
 GEN1138R014 
 missense_variant 
 c.1162A>T 
 p.Ile388Phe 
 Familial 
 Paternal 
 Simplex 
 GEN1138R015 
 missense_variant 
 c.920A>G 
 p.Lys307Arg 
 Unknown 
  
  
 GEN1138R016 
 missense_variant 
 c.959G>A 
 p.Arg320His 
 Unknown 
  
  
 GEN1138R017 
 frameshift_variant 
 c.1162dup 
 p.Glu388GlyfsTer27 
 De novo 
  
 Simplex 
 GEN1138R018 
 frameshift_variant 
 c.314del 
 p.Tyr105LeufsTer37 
 De novo 
  
  
 GEN1138R019 
 missense_variant 
 c.1016T>C 
 p.Val339Ala 
 De novo 
  
  
 GEN1138R020 
 missense_variant 
 c.1268A>T 
 p.Lys423Met 
 De novo 
  
  
 GEN1138R021 
 missense_variant 
 c.784T>C 
 p.Cys262Arg 
 De novo 
  
  
 GEN1138R022 
 missense_variant 
 c.1162A>T 
 p.Ile388Phe 
 De novo 
  
  
 GEN1138R023 
 stop_gained 
 c.1114C>T 
 p.Arg372Ter 
 De novo 
  
  
 GEN1138R024 
 stop_gained 
 c.202C>T 
 p.Gln68Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN1138R025 
 splice_region_variant 
 c.759G>A 
 p.Lys253= 
 De novo 
  
  
  et al.  
 GEN1138R026 
 missense_variant 
 c.99C>A 
 p.Tyr33Ter 
 De novo 
  
  
  et al.  
 GEN1138R027 
 copy_number_loss 
  
  
 Unknown 
  
  
  et al.  
 GEN1138R028 
 frameshift_variant 
 c.1292del 
 p.Cys431SerfsTer18 
 Familial 
 Maternal 
  
  et al.  
 GEN1138R029 
 missense_variant 
 c.971A>G 
 p.Tyr324Cys 
 De novo 
  
  
  et al.  
 GEN1138R030 
 missense_variant 
 c.926G>A 
 p.Gly309Asp 
 De novo 
  
  
  et al.  
 GEN1138R031 
 stop_gained 
 c.751C>T 
 p.Gln251Ter 
 De novo 
  
  
  et al.  
 GEN1138R032 
 frameshift_variant 
 c.357dup 
 p.Gln120AlafsTer19 
 De novo 
  
  
  et al.  
 GEN1138R033 
 copy_number_loss 
  
  
 De novo 
  
  
  et al.  
 GEN1138R034 
 missense_variant 
 c.208T>C 
 p.Cys70Arg 
 Familial 
 Maternal 
  
  et al.  
 GEN1138R035 
 splice_site_variant 
 c.237_238dup 
 p.Lys80ArgfsTer6 
 Unknown 
  
  
  et al.  
 GEN1138R036 
 stop_gained 
 c.777G>A 
 p.Trp259Ter 
 Unknown 
 Not maternal 
  
  et al.  
 GEN1138R037 
 missense_variant 
 c.86G>T 
 p.Gly29Val 
 Unknown 
  
  
  et al.  
 GEN1138R038 
 frameshift_variant 
 c.1322_1324delinsGG 
 p.Phe441TrpfsTer8 
 De novo 
  
  
  et al.  
 GEN1138R039 
 missense_variant 
 c.896G>A 
 p.Cys299Tyr 
 De novo 
  
  
  et al.  
 GEN1138R040 
 frameshift_variant 
 c.1162dup 
 p.Glu388GlyfsTer27 
 Familial 
 Maternal 
  
  et al.  
 GEN1138R041 
 missense_variant 
 c.926G>A 
 p.Gly309Asp 
 Familial 
 Paternal 
  
  et al.  
 GEN1138R042 
 copy_number_loss 
  
  
 Unknown 
 Not maternal 
  
  et al.  
 GEN1138R043 
 inframe_deletion 
 c.1074_1076del 
 p.Lys358del 
 De novo 
  
  
  et al.  
 GEN1138R044 
 inframe_deletion 
 c.1074_1076del 
 p.Lys358del 
 Familial 
 Paternal 
 Multiplex 
  et al.  
 GEN1138R045 
 inframe_deletion 
 c.659_661del 
 p.Met220del 
 De novo 
  
  
  et al.  
 GEN1138R046 
 missense_variant 
 c.935A>G 
 p.Glu312Gly 
 De novo 
  
  
  et al.  
 GEN1138R047 
 stop_gained 
 c.465dup 
 p.His156AlafsTer4 
 Unknown 
 Not paternal 
  
  et al.  
 GEN1138R048 
 missense_variant 
 c.1066G>A 
 p.Glu356Lys 
 Familial 
 Maternal 
  
  et al.  
 GEN1138R049 
 missense_variant 
 c.344C>G 
 p.Ala115Gly 
 Familial 
 Paternal 
  
  et al.  
 GEN1138R050 
 frameshift_variant 
 c.342_343insAA 
 p.Leu115AsnfsTer28 
 Familial 
 Paternal 
  
  et al.  
 GEN1138R051 
 stop_gained 
 c.1114C>T 
 p.Arg372Ter 
 De novo 
  
  
  et al.  
 GEN1138R052 
 frameshift_variant 
 c.654_655insTC 
 p.Thr219SerfsTer3 
 Familial 
 Maternal 
  
  et al.  
 GEN1138R053 
 stop_gained 
 c.640C>T 
 p.Arg214Ter 
 De novo 
  
  
  et al.  
 GEN1138R054 
 stop_gained 
 c.423T>G 
 p.Tyr141Ter 
 Familial 
 Maternal 
  
  et al.  
 GEN1138R055 
 missense_variant 
 c.207G>C 
 p.Lys69Asn 
 De novo 
  
  
  et al.  
 GEN1138R056 
 missense_variant 
 c.817G>T 
 p.Val273Leu 
 De novo 
  
  
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
9
Duplication
 1
 
9
Duplication
 1
 
9
Deletion
 2
 
9
Deletion
 2
 
9
Deletion
 4
 
9
Deletion
 1
 
9
Deletion
 1
 
9
Deletion
 1
 
9
Deletion-Duplication
 15
 
9
Deletion
 1
 
9
Deletion
 3
 
9
N/A
 2
 

Model Summary

Rorb is expressed by a population of spinal cord interneurons that mediate axodendritic/axosomatic feedforward inhibition of spinal projection neurons in the deep dorsal horn. Mice with a pathogenic mutation arising at the Rorb locus show an increased sensorimotor response in tactile PPI, in which an air puff stimulus precedes a loud acoustic tone. Rorb mutants, however, did not show any other ASD-like phenotypes. Specifically, Rorb mutants show normal startle response to a tactile stimulus, no anxiety phenotype, no hyperlocomotion and no sociability deficits.

References

Type
Title
Author, Year
Primary

M_RORB_1_SP_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Rorb hstp heterozygous mutant carries one copy of a spontaneous mutation allele (MGI:3846436) consisting of a duplication of approximately 326 kb from Chromosome 19 19,010,565 bp to 19,336,747 bp (GRCm38), which includes the first exon of this gene. Transcript levels in the brain are decreased but not in the retina.
Allele Type: Knockin
Strain of Origin: Not specified
Genetic Background: C57BL/6J, 129/SvEv, CD1
ES Cell Line: Not applicable
Mutant ES Cell Line:
Model Source: Jackson Laboratory

M_RORB_2_SP_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Rorb hstp homozygous mutant carries two copies of a spontaneous mutation allele (MGI:3846436) consisting of a duplication of approximately 326 kb from Chromosome 19 19,010,565 bp to 19,336,747 bp (GRCm38), which includes the first exon of this gene. Transcript levels in the brain are decreased but not in the retina.
Allele Type: Knockin
Strain of Origin: Not specified
Genetic Background: C57BL/6J, 129/SvEv, CD1
ES Cell Line: Not applicable
Mutant ES Cell Line:
Model Source: Jackson Laboratory

M_RORB_1_SP_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Sensorimotor gating: tactile cue1
Decreased
Description: Rorb heterozygous mutant mice exhibit enhanced sensitivity to back hairy skin stimulation, as measured by tactile prepulse inhibition (PPI) of an acoustic startle response.
Exp Paradigm: 0.9-psi air puff preceded 120 dB acoustic startle pulse,delivered at variable interstimulus intervals
 Prepulse inhibition
 6-8 weeks
Anxiety1
 No change
 Open field test
 6-8 weeks
Anxiety1
 No change
 Elevated plus maze test
 6-8 weeks
Habituation to aversive stimuli1
 No change
 Response to air puff
 P4
General locomotor activity: ambulatory activity1
 No change
 Open field test
 6-8 weeks
Hypersensitivity: tactile stimulus1
 No change
 Response to air puff
 P4
Startle response: tactile stimulus1
 No change
 Response to air puff
 6-8 weeks
Social approach1
 No change
 Three-chamber social approach test
 6-8 weeks
 Not Reported:

M_RORB_2_SP_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Habituation to aversive stimuli1
 No change
 Response to air puff
 P4
Hypersensitivity: tactile stimulus1
 No change
 Response to air puff
 P4
 Not Reported:

 

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