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Relevance to Autism

Greene et al., 2025 reported a total of 25 cases with recurrent de novo single-nucleotide mutations at nucleotide positions 4 and 35 of RNU2-2 presenting with a neurodevelopmental syndrome characterized by developmental delay, intellectual disability, autistic behavior, microcephaly, hypotonia, hyperventilation, dysmorphic features, and a severe and complex seizure phenotype. Analysis of R-loop forming regions in ribozyme, snoRNA, and snRNA genes, specifically in rare disease cohorts, in Jackson et al., 2025 identified a total of 27 individuals from the 100,000 Genomes Project, the Genomics England, National Genomics Research Library database, the Solve-RD resource, the Centre for Population Genetics in Australia database, and the South Korean Undiagnosed Diseases database with rare RNU2-2 variants within a region from 1 to 60 bp constrained for variants in gnomAD v4. Detailed clinical information was available for 7 of these individuals, who presented with a neurodevelopmental disorder characterized by developmental delay and/or intellectual disability (7/7 individuals), epilepsy/seizures (5/7), and autism spectrum disorder (3/7), in addition to other non-neurological phenotypes.

Molecular Function

Small nuclear RNAs (snRNAs), such as U2 snRNA, are components of the spliceosome complex, directing accurate removal of intronic sequences from pre-mRNAs. The human genome contains 2 functional U2 snRNA genes,RNU2-1 andRNU2-2.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Mutations in the small nuclear RNA gene RNU2-2 cause a severe neurodevelopmental disorder with prominent epilepsy
DD, ID, epilepsy/seizures
Autistic behavior
Support
Pathogenic Variants in RNU2-2, a Non-coding Spliceosomal RNA, Cause a Distinctive Developmental and Epileptic Encephalopathy
Developmental and epileptic encephalopathy 119, AS
Recent Recommendation
Analysis of R-loop forming regions identifies RNU2-2 and RNU5B-1 as neurodevelopmental disorder genes
DD, ID
ASD, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1495R001 
 non_coding_transcript_variant 
 n.4G>A 
  
 De novo 
  
 Simplex 
 GEN1495R002 
 non_coding_transcript_variant 
 n.4G>A 
  
 De novo 
  
 Simplex 
 GEN1495R003 
 non_coding_transcript_variant 
 n.4G>A 
  
 De novo 
  
 Simplex 
 GEN1495R004 
 non_coding_transcript_variant 
 n.4G>A 
  
 De novo 
  
 Simplex 
 GEN1495R005 
 non_coding_transcript_variant 
 n.35A>G 
  
 De novo 
  
 Simplex 
 GEN1495R006 
 non_coding_transcript_variant 
 n.35A>G 
  
 De novo 
  
 Simplex 
 GEN1495R007 
 non_coding_transcript_variant 
 n.35A>G 
  
 De novo 
  
 Simplex 
 GEN1495R008 
 non_coding_transcript_variant 
 n.35A>G 
  
 De novo 
  
 Simplex 
 GEN1495R009 
 non_coding_transcript_variant 
 n.35A>G 
  
 De novo 
  
 Simplex 
 GEN1495R010 
 non_coding_transcript_variant 
 n.35A>G 
  
 De novo 
  
 Simplex 
 GEN1495R011 
 non_coding_transcript_variant 
 n.4G>A 
  
 De novo 
  
 Simplex 
 GEN1495R012 
 non_coding_transcript_variant 
 n.35A>G 
  
 De novo 
  
 Simplex 
 GEN1495R013 
 non_coding_transcript_variant 
 n.35A>G 
  
 De novo 
  
 Simplex 
 GEN1495R014 
 non_coding_transcript_variant 
 n.4G>A 
  
 De novo 
  
 Simplex 
 GEN1495R015 
 non_coding_transcript_variant 
 n.4G>A 
  
 De novo 
  
 Simplex 
 GEN1495R016 
 non_coding_transcript_variant 
 n.3C>A 
  
 De novo 
  
  
 GEN1495R017 
 non_coding_transcript_variant 
 n.4G>A 
  
 De novo 
  
  
 GEN1495R018 
 non_coding_transcript_variant 
 n.4G>A 
  
 De novo 
  
  
 GEN1495R019 
 non_coding_transcript_variant 
 n.4G>A 
  
 De novo 
  
  
 GEN1495R020 
 non_coding_transcript_variant 
 n.4G>A 
  
 De novo 
  
  
 GEN1495R021 
 non_coding_transcript_variant 
 n.4G>A 
  
 Unknown 
  
  
 GEN1495R022 
 non_coding_transcript_variant 
 n.4G>A 
  
 Unknown 
  
  
 GEN1495R023 
 non_coding_transcript_variant 
 n.4G>A 
  
 De novo 
  
  
 GEN1495R024 
 non_coding_transcript_variant 
 n.35A>G 
  
 Unknown 
 Not maternal 
  
 GEN1495R025 
 non_coding_transcript_variant 
 n.35A>G 
  
 De novo 
  
  
 GEN1495R026 
 non_coding_transcript_variant 
 n.35A>G 
  
 Unknown 
 Not maternal 
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model

No Animal Model Data Available

No PIN Data Available
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