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Relevance to Autism

A SNP downstream of the RIT2 gene (rs16976358) associated with ASD in a case-control analysis of 156 Japanese ASD cases and 620 Japanese controls (P-value 4.54E-06; OR 2.246, 95% CI 1.578-3.197) (Liu et al., 2015). Assocation of this SNP with ASD was replicated in a case-control analysis of 470 Iranian ASD cases and 470 Iranian controls (P-value 1.40; OR 1.40, 95% CI 1.08-1.81) (Emamalizadeh et al., 2016).

Molecular Function

This gene belongs to the RAS superfamily of small GTPases and demonstrates neuron-specific tissue expression. RIT2 has been identified as a susceptibility gene for Parkinson's disease in multiple association studies (Pankratz et al., 2012; Emamalizadeh et al., 2014; Nie et al., 2014; Wang et al., 2014; Liu et al., 2015; Zhang et al., 2015).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Genome-wide Association Study of Autism Spectrum Disorder in the East Asian Populations.
ASD
Positive Association
Ras-like without CAAX 2 (RIT2): a susceptibility gene for autism spectrum disorder.
ASD
Positive Association
RIT2 Polymorphisms: Is There a Differential Association?
ASD
SCZ, BPD

Rare

No Rare Variants Available

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN815C001 
 intergenic_variant 
 rs16976358 
  
  
 156 ASD cases and 620 controls (Japan) 
 Discovery 
 GEN815C002 
 intergenic_variant 
 rs16976358 
  
  
 470 ASD cases and 470 controls (Iran) 
 Replication 
 GEN815C003 
 intergenic_variant 
 rs16976358 
  
  
 510 schizophrenia cases and 510 controls (Iran) 
 Discovery 
 GEN815C004 
 intergenic_variant 
 rs16976358 
  
  
 440 bipolar disorder cases and 440 controls (Iran) 
 Discovery 
 GEN815C005 
 intergenic_variant 
 rs16976358 
  
  
 532 Iranian ASD cases and 472 ethnically-matched healthy controls 
 Replication 
 GEN815C006 
 intron_variant 
 rs4130047 
 c.103+17147A>G 
  
 532 Iranian ASD cases and 472 ethnically-matched healthy controls 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
18
Duplication
 2
 
18
Duplication
 2
 
18
Deletion-Duplication
 1
 
18
Duplication
 1
 
18
Deletion
 2
 
18
Deletion-Duplication
 16
 
18
N/A
 3
 

No Animal Model Data Available

No PIN Data Available
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