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Relevance to Autism

Studies have identified variations in the RBFOX1 gene with autism and developmental delay. One study (Sebat et al., 2007) found that de novo CNVs were more significantly identified with autism than had been previously recognized.

Molecular Function

RNA-binding protein that regulates alternative splicing events by binding to 5'-UGCAUGU-3' elements. Regulates alternative splicing of tissue-specific exons and of differentially spliced exons during erythropoiesis.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Strong association of de novo copy number mutations with autism.
ASD
Positive Association
Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.
SCZ
Positive Association
Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with ...
ASD
Positive Association
Cytogenetic and molecular characterization of A2BP1/FOX1 as a candidate gene for autism.
ASD
Positive Association
Multi-trait analysis for genome-wide association study of five psychiatric disorders
ASD
Positive Association
Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions
Depression
Positive Association
Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder
Depression
Positive Association
Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.
Depression
Negative Association
Outfoxed by RBFOX1-a caution about ascertainment bias.
ASD
Support
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
ASD
Support
Rbfox1 up-regulation impairs BDNF-dependent hippocampal LTP by dysregulating TrkB isoform expression levels.
Support
Mutations in Human Accelerated Regions Disrupt Cognition and Social Behavior.
ASD
Support
RBFOX1 and RBFOX3 mutations in rolandic epilepsy.
Epilepsy
Support
Support
Intragenic deletion of RBFOX1 associated with neurodevelopmental/neuropsychiatric disorders and possibly other clinical presentations.
DD, Epilepsy
ID, ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder.
ASD
Support
Complex Diagnostics of Non-Specific Intellectual Developmental Disorder
DD, ID
Support
Rare exonic deletions of the RBFOX1 gene increase risk of idiopathic generalized epilepsy.
Epilepsy
ASD, DD
Support
Analysis of recent shared ancestry in a familial cohort identifies coding and noncoding autism spectrum disorder variants
ASD
Highly Cited
A novel protein with RNA-binding motifs interacts with ataxin-2.
Recent Recommendation
RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts.
Recent Recommendation
Role for Fox-1/Fox-2 in mediating the neuronal pathway of calcitonin/calcitonin gene-related peptide alternative RNA processing.
Recent Recommendation
Rbfox1 Mediates Cell-type-Specific Splicing in Cortical Interneurons.
Recent Recommendation
An inducible change in Fox-1/A2BP1 splicing modulates the alternative splicing of downstream neuronal target exons.
Recent Recommendation
Meta-analysis of genome-wide association studies in five cohorts reveals common variants in RBFOX1, a regulator of tissue-specific splicing, associ...
Recent Recommendation
Molecular basis of RNA recognition by the human alternative splicing factor Fox-1.
Recent Recommendation
Essential role of the nuclear isoform of RBFOX1, a candidate gene for autism spectrum disorders, in the brain development.
Recent Recommendation
A genome-wide association study suggests that a locus within the ataxin 2 binding protein 1 gene is associated with hand osteoarthritis: the Treat-...
Recent Recommendation
Rbfox1 downregulation and altered calpain 3 splicing by FRG1 in a mouse model of Facioscapulohumeral muscular dystrophy (FSHD).
Recent Recommendation
Rbfox Proteins Regulate Splicing as Part of a Large Multiprotein Complex LASR.
Recent Recommendation
U1-independent pre-mRNA splicing contributes to the regulation of alternative splicing.
Recent Recommendation
Rare inherited A2BP1 deletion in a proband with autism and developmental hemiparesis.
ASD
Recent Recommendation
MiR-980 Is a Memory Suppressor MicroRNA that Regulates the Autism-Susceptibility Gene A2bp1.
Recent Recommendation
Alternative isoform regulation in human tissue transcriptomes.
Recent Recommendation
Clinically relevant single gene or intragenic deletions encompassing critical neurodevelopmental genes in patients with developmental delay, mental...
DD
Recent Recommendation
Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA
ASD
Recent Recommendation
Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2.
Recent Recommendation
DD, ID
ADHD, epilepsy/seizures, autistic features
Recent Recommendation
The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain.
Recent Recommendation
Role of the cytoplasmic isoform of RBFOX1/A2BP1 in establishing the architecture of the developing cerebral cortex.
Recent Recommendation
Repression of prespliceosome complex formation at two distinct steps by Fox-1/Fox-2 proteins.
Recent Recommendation
Behavioural and functional evidence revealing the role of RBFOX1 variation in multiple psychiatric disorders and traits
ASD, SCZ, MDD
Recent Recommendation
Developmental expression mapping of a gene implicated in multiple neurodevelopmental disorders, A2bp1 (Fox1).

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN001R001 
 copy_number_loss 
 Unnamed: 7 
 Unnamed: 8 
 De novo 
 NA 
 Simplex 
 GEN001R002 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN001R003 
 5_prime_UTR_variant 
 c.-507G>A 
  
  
  
  
 GEN001R004 
 intron_variant 
 c.-126-6_-126-4del 
  
  
  
  
 GEN001R005 
 intron_variant 
 c.-64+13C>G 
  
  
  
  
 GEN001R006 
 intron_variant 
 c.28-185339A>G 
  
  
  
  
 GEN001R007 
 intron_variant 
 c.-63-126A>T 
  
  
  
  
 GEN001R008 
 intron_variant 
 c.-63-124C>G 
  
  
  
  
 GEN001R009 
 intron_variant 
 c.-332C>A 
  
  
  
  
 GEN001R010 
 intron_variant 
 c.-331T>A 
  
  
  
  
 GEN001R011 
 intron_variant 
 NM_018723.3:c.-15-21delT 
  
  
  
  
 GEN001R012 
 intron_variant 
 c.27+15T>C 
  
  
  
  
 GEN001R013 
 intron_variant 
 c.28-185477_28-185476dup 
  
  
  
  
 GEN001R014 
 5_prime_UTR_variant 
 c.-127+111651A>G 
  
  
  
  
 GEN001R015 
 synonymous_variant 
 c.126G>A 
 p.Thr42= 
  
  
  
 GEN001R016 
 intron_variant 
 c.162C>T 
 p.Gly54= 
  
  
  
 GEN001R017 
 synonymous_variant 
 c.282C>T 
 p.Asp94= 
  
  
  
 GEN001R018 
 intron_variant 
 c.316C>T 
 p.Pro106Ser 
  
  
  
 GEN001R019 
 intron_variant 
 c.622+27A>G 
  
  
  
  
 GEN001R020 
 intron_variant 
 c.676+92A>G 
  
  
  
  
 GEN001R021 
 intron_variant 
  
  
  
  
  
 GEN001R022 
 intron_variant 
 c.677-25C>G 
  
  
  
  
 GEN001R023 
 synonymous_variant 
 c.750C>T 
 p.Arg250= 
  
  
  
 GEN001R024 
 synonymous_variant 
 c.976G>A 
 p.Gly326Ser 
  
  
  
 GEN001R025 
 intron_variant 
 c.850-5175G>A 
  
  
  
  
 GEN001R026 
 intron_variant 
 c.990+73G>T 
  
  
  
  
 GEN001R027 
 3_prime_UTR_variant 
 c.*439G>T 
  
  
  
  
 GEN001R028 
 copy_number_loss 
  
  
  
  
  
 GEN001R029 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN001R030 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R031 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R032 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R033 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Extended multiplex 
 GEN001R034 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN001R035 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN001R036 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN001R037 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R038 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R039 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R040 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R041 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN001R042 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN001R043 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN001R044 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN001R045 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN001R046 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN001R047 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R048 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R049 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R050 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R051 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Unknown 
 GEN001R052 
 copy_number_loss 
  
  
 De novo 
  
 Unknown 
 GEN001R053 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R054 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R055 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R056 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R057 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R058 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R059 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN001R060 
 copy_number_gain 
  
  
 Unknown 
  
 Unknown 
 GEN001R061 
 copy_number_loss 
  
  
 Unknown 
  
 Multiplex 
 GEN001R062 
 frameshift_variant 
 c.677-23197_677-23193delinsATCCAGTATCCA 
  
 Familial 
 Maternal 
 Multiplex 
 GEN001R063 
 inframe_deletion 
 c.683_688del 
 p.Gly228_Pro230delinsAla 
 Familial 
 Paternal 
 Multiplex 
 GEN001R064 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN001R065 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multi-generational 
 GEN001R066 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN001R067 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN001R068 
 intergenic_variant 
 insT 
  
  
  
 Unknown 
 GEN001R069 
 intron_variant 
 c.-16+54949C>G 
  
  
  
 Unknown 
 GEN001R070 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN001R071 
 missense_variant 
 c.1252T>G 
 p.Ser418Ala 
 De novo 
  
 Simplex 
 GEN001R072 
 missense_variant 
 c.413G>A 
 p.Arg138Gln 
 De novo 
  
  
 GEN001R073 
 missense_variant 
 c.353G>A 
 p.Arg118Gln 
 De novo 
  
 Simplex 
  et al.  
 GEN001R074 
 missense_variant 
 c.353G>A 
 p.Arg118Gln 
 De novo 
  
 Simplex 
  et al.  
 GEN001R075 
 missense_variant 
 c.353G>A 
 p.Arg118Gln 
 De novo 
  
 Simplex 
  et al.  
 GEN001R076 
 missense_variant 
 c.460G>T 
 p.Glu154Ter 
 De novo 
  
 Simplex 
  et al.  
 GEN001R077 
 missense_variant 
 c.559G>A 
 p.Ala187Thr 
 De novo 
  
 Simplex 
  et al.  
 GEN001R078 
 missense_variant 
 c.353G>A 
 p.Arg118Gln 
 De novo 
  
 Simplex 
  et al.  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN001C001 
 intron_variant 
 rs12930616 
 c.-63-47998G>C;c.67-47998G>C;c.415-47998G>C;c.46-47998G>C;c.535-47998G>C 
  
 7387 ASD cases and 8567 controls from Autism Center of Excellence Network (ACE), Autism Genetic Resource Exchange (AGRE), Autism Genome Project (AGP), Finnish Case-Control ASD Collection, NIMH Repository and Montreal/Boston (MonBos) Collection, Population-Based Autism Genetics and Environment Study (PAGES), Simons Simplex Collection (SSC), and Weiss Laboratory Autism Collection 
 Discovery 
 GEN001C002 
 intron_variant 
 rs12447542 
 c.915-14878G>A;c.996-14878G>A;c.1125-14878G>A;c.1059-14878G>A;c.1111+811G>A 
  
 40,675 SCZ cases and 64,643 controls (CLOZUK and independent PGC datasets) 
 Discovery 
 GEN001C003 
 intron_variant 
 rs6500768 
 c.-126-24355T>C;c.4-24355T>C 
  
 46,350 ASD cases, 65,967 schizophrenia cases, 41,653 bipolar disorder cases, 55,374 ADHD cases, and 688,809 cases with depression 
 Discovery 
 GEN001C004 
 intron_variant 
 rs8063603 
 c.-126-56351G>A;c.4-56351G>A 
  
 135,458 MDD cases and 344,901 controls from 7 cohorts (PGC, deCODE, GenScotland, GERA, iPSYCH, UK Biobank, and 23andMe) 
 Discovery 
 GEN001C005 
 intron_variant 
 rs7198928 
 c.676+9062T>C;c.805+9062T>C;c.736+9062T>C 
  
 135,458 MDD cases and 344,901 controls from 7 cohorts (PGC, deCODE, GenScotland, GERA, iPSYCH, UK Biobank, and 23andMe) 
 Discovery 
 GEN001C006 
 intron_variant 
 rs3785234 
 c.676+10052C>T;c.805+10052C>T;c.736+10052C>T 
  
 90,150 MDD cases and 246,603 controls from three genome-wide association studies (23andMe, CONVERGE, and PGC) 
 Discovery 
 GEN001C007 
 intron_variant 
 rs7198928 
 c.676+9062T>C;c.805+9062T>C;c.736+9062T>C 
  
 Meta-analysis cohort of 246,363 MDD cases and 561,190 controls (23andMe, PGC, and UKBiobank), followed by an independent replication cohort of 414,055 cases and 892,299 controls (23andMe) 
 Replication 
 GEN001C008 
 intron_variant 
 rs7193263 
 c.-126-51116G>A;c.4-51116G>A 
  
 Meta-analysis cohort of 246,363 MDD cases and 561,190 controls (23andMe, PGC, and UKBiobank), followed by an independent replication cohort of 414,055 cases and 892,299 controls (23andMe) 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
16
Deletion-Duplication
 42
 
16
Deletion-Duplication
 68
 
16
Duplication
 3
 
16
Deletion-Duplication
 2
 
16
Deletion
 5
 

Model Summary

Rbfox1 knockout mice provide a new model to study the post-transcriptional regulation of synaptic function.

References

Type
Title
Author, Year
Primary
The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain.
Additional
Behavioural and functional evidence revealing the role of RBFOX1 variation in multiple psychiatric disorders and traits

M_RBFOX1_1_CKO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Conditional deletion of exons 11- 12 of the Rbfox1 gene using Nestin-cre in neuronal, glial and other cell types in the central and peripheral nervous system (authors assess deletion in CNS only)
Allele Type: Conditional loss-of-function
Strain of Origin: Not Specified
Genetic Background: 129S2/Sv x C57BL/6J
ES Cell Line: Not Specified
Mutant ES Cell Line: 129S2/Sv
Model Source: CHORI

M_RBFOX1_1_CKO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Conditional heterozygous deletion of exons 11- 12 of the Rbfox1 gene using Nestin-cre in neuronal, glial and other cell types in the central and peripheral nervous system (authors assess deletion in CNS only)
Allele Type: Conditional loss-of-function
Strain of Origin: Not Specified
Genetic Background: 129S2/Sv x C57BL/6J
ES Cell Line: Not Specified
Mutant ES Cell Line: 129S2/Sv
Model Source: CHORI

M_RBFOX1_2_CKO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: A targeting vector was designed to insert loxP sites flanking exons 11-12 of the RNA binding protein, Rbfox1 gene, followed by a frt-flanked neo cassette. Flp-mediated recombination removed the neo cassette leaving exons 11 and 12 floxed. Rbfox1^fl/fl mice were crossed to mice carrying Cre-recombinase under the direction of the rat Synapsin I promoter (Synapsin1-Cre).The resulting genotype for the conditional homozygote mice is Rbfox1^fl/fl;Synapsin1-Cre+/-.
Allele Type: Conditional Knockout
Strain of Origin: 129S2/SvPas; (C57BL/6 x CBA)F2
Genetic Background: C57Bl/6J
ES Cell Line: Not Specified
Mutant ES Cell Line:
Model Source: Douglas Black Lab; Jamey Marth Lab

M_RBFOX1_3_CKO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: A targeting vector was designed to insert loxP sites flanking exons 11-12 of the RNA binding protein, Rbfox1 gene, followed by a frt-flanked neo cassette. Flp-mediated recombination removed the neo cassette leaving exons 11 and 12 floxed. Rbfox1^fl/fl mice were crossed to mice carrying Cre-recombinase under the direction of the rat Synapsin I promoter (Synapsin1-Cre).The resulting genotype for the conditional heterozygote mice is Rbfox1^fl/+;Synapsin1-Cre+/-.
Allele Type: Conditional Knockout
Strain of Origin: 129S2/SvPas; (C57BL/6 x CBA)F2
Genetic Background: C57Bl/6J
ES Cell Line: Not Specified
Mutant ES Cell Line:
Model Source: Douglas Black Lab; Jamey Marth Lab

M_RBFOX1_1_CKO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Dendritic architecture: spine density1
Decreased
Description: Decreased spine density along dendrites
Exp Paradigm: Golgi-cox staining along granule cell dendrites of dentate gyrus
 Golgi-cox staining
 Unreported
Epsp-spike relationship1
Decreased
Description: Decreased stimulus intensity required to evoke field excitatory postynaptic potential (fepsp) in dentate gyrus
Exp Paradigm: Hippocampal field potential recordings on coronal slices in response to stimulation of lateral prefornat path
 Field potential recordings
 2-3 months
Seizures1
Increased
Description: Increased incidence of infrequent, spontaneous seizures under standard housing conditions
Exp Paradigm: General observations
 General observations
 Unreported
Seizures1
Increased
Description: Increased response to kainic acid with increased chance of reaching status epilepticus culminating in death
Exp Paradigm: General observations after systemic administration of kainic acid at 20 mg/kg body weight
 General observations
 Unreported
Protein expression level evidence1
Decreased
Description: Decreased protein and expression of rbfox1 in dentate gyrus
Exp Paradigm: Rbfox1 expression-western blot
 Western blot
 Unreported
Protein expression level evidence1
Decreased
Description: Decreased protein and expression of rbfox1 in dentate gyrus
Exp Paradigm: Rbfox1 expression- immunohistochemistry: fluorescence
 Immunohistochemistry
 Unreported
Transcriptome diversity1
Abnormal
Description: Few changes in overall transcript abundance in brain
Exp Paradigm: Whole-transcriptome analysis
 Gene expression microarray
 Unreported
Protein expression level evidence1
 No change
 Western blot
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Physiological parameters, Repetitive behavior, Sensory, Social behavior

M_RBFOX1_1_CKO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Seizures1
Increased
Description: Increased response to kainic acid with increased chance of reaching status epilepticus culminating in death
Exp Paradigm: General observations after systemic administration of kainic acid at 20 mg/kg body weight
 General observations
 Unreported
Transcriptome diversity1
Abnormal
Description: Few smaller changes in overall transcript abundance in brain with large variation between biological replicates
Exp Paradigm: Whole-transcriptome analysis
 Gene expression microarray
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Sensory, Social behavior

M_RBFOX1_2_CKO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
General locomotor activity: ambulatory activity1
Increased
Description: Homozygous Rbfox1 knockout mice had a significantly greater distance travelled during the Y-maze test compared to control mice.
 Y-maze test
 10-12 weeks
General locomotor activity: ambulatory activity1
Increased
Description: Homozygous Rbfox1 knockout mice had pronounced hyperactivity in the open field test compared to control mice.
 Open field test
 10-12 weeks
General locomotor activity: ambulatory activity1
Increased
Description: Homozygous Rbfox1 knockout mice had pronounced hyperactivity in the light-dark box compared to control mice.
 Light-dark exploration test
 10-12 weeks
Repetitive digging1
Increased
Description: Homozygous Rbfox1 knockout mice buried more marbles in the marble-burying test compared to control mice.
 Marble-burying test
 10-12 weeks
Startle response: acoustic stimulus1
Decreased
Description: Homozygous Rbfox1 knockout mice showed a deficit in the acoustic startle response compared to control mice.
 Prepulse inhibition
 12-14 weeks
Social interaction1
Decreased
Description: Homozygous Rbfox1 knockout mice showed significantly less social interest compared to control mice, spending significantly less time investigating unfamiliar stimulus mice.
 Reciprocal social interaction test
 11-13 weeks
Aggression1
Decreased
Description: Homozygous Rbfox1 knockout mice displayed a complete lack of aggressive behavior throughout testing, whereas controls mice had increased aggressive behavior during repeated sessions of testing.
 Resident-intruder test
 11-13 weeks
Size/growth1
Decreased
Description: Homozygous Rbfox1 knockout mice had decreased body weights compared to controls.
 Body weight measurement
 10-14 weeks
Anxiety1
Increased
Description: Homozygous Rbfox1 knockout mice spent less time in the center of the open field compared to control mice.
 Open field test
 10-12 weeks
Thigmotaxis1
Increased
Description: Homozygous Rbfox1 knockout mice exhibited greater thigmotaxis in the open field test compared to control mice, moving mainly in the peripheral area of the open field; the Rbfox1 knockout mice also spent twice as much time as control moving adjacent to the maze walls.
 Open field test
 10-12 weeks
Exploratory activity1
Increased
Description: A subset of the mice was tested again in the open field at the age of 8 to 9 months and was exposed to a novel object placed in the center of the open field, the homozygous Rbfox1 knockout mice spent three times longer investigating the object compared to control mice.
 Open field test
 8 months
Anxiety1
Increased
Description: Homozygous Rbfox1 knockout mice spent more time in the dark zone compared to control mice.
 Light-dark exploration test
 10-12 weeks
Cued or contextual fear conditioning1
Decreased
Description: Homozygous Rbfox1 knockout mice had impaired fear acquisition and extinction compared to control mice.
 Fear conditioning test
 12-14 weeks
Cued or contextual fear conditioning: memory of cue1
Decreased
Description: Homozygous Rbfox1 knockout mice were unable to retain fear memory as evident from their reduced freezing in the extinction stage, and significantly lower freezing in recall stage compared to control mice.
 Fear conditioning test
 12-14 weeks
Targeted expression1
Decreased
Description: Homozygous Rbfox1 knockout mice had a pronounced downregulation of Rbfox1 without changes in either Rbfox2 or Rbfox 3 compared to controls.
 Quantitative PCR (qRT-PCR)
 unreported
Spatial working memory1
 No change
 Y-maze test
 10-12 weeks
Visual discrimination learning1
 No change
 Pairwise visual discrimination task
 10-12 weeks
Sensorimotor gating1
 No change
 Prepulse inhibition
 12-14 weeks
 Not Reported:

M_RBFOX1_3_CKO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Cued or contextual fear conditioning: memory of cue1
Decreased
Description: Heterozygous Rbfox1 knockout mice were unable to retain fear memory as evident from their reduced freezing in the extinction stage compared to wildtype mice.
 Fear conditioning test
 12-14 weeks
Size/growth1
 No change
 Body weight measurement
 10-14 weeks
Anxiety1
 No change
 Open field test
 10-12 weeks
Anxiety1
 No change
 Light-dark exploration test
 10-12 weeks
Thigmotaxis1
 No change
 Open field test
 10-12 weeks
Cued or contextual fear conditioning1
 No change
 Fear conditioning test
 12-14 weeks
Spatial working memory1
 No change
 Y-maze test
 10-12 weeks
General locomotor activity: ambulatory activity1
 No change
 Light-dark exploration test
 10-12 weeks
General locomotor activity: ambulatory activity1
 No change
 Open field test
 10-12 weeks
General locomotor activity: ambulatory activity1
 No change
 Y-maze test
 10-12 weeks
Sensorimotor gating1
 No change
 Prepulse inhibition
 12-14 weeks
Startle response: acoustic stimulus1
 No change
 Prepulse inhibition
 12-14 weeks
 Not Reported:





Download RBFOX1's Cytoscape file

Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
ABI1 abl-interactor 1 10006 Q8IZP0 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
ACAA2 acetyl-CoA acyltransferase 2 10449 B3KNP8 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ACTB actin, beta 60 P60709 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ACTN4 actinin, alpha 4 81 O43707 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ADAM9 ADAM metallopeptidase domain 9 8754 Q13443 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ADD1 adducin 1 (alpha) 118 P35611 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ADD3 adducin 3 (gamma) 120 Q9UEY8 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide 128 P11766 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
AHSA1 AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) 10598 O95433 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ANKRD17 ankyrin repeat domain 17 26057 O75179 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ANXA6 annexin A6 309 P08133 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
AP1G1 adaptor-related protein complex 1, gamma 1 subunit 164 O43747 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
AP2M1 adaptor-related protein complex 2, mu 1 subunit 1173 Q96CW1 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1 328 P27695 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
APLP2 amyloid beta (A4) precursor-like protein 2 334 Q06481 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
APOA1BP apolipoprotein A-I binding protein 128240 Q8NCW5 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
APP amyloid beta (A4) precursor protein 351 P05067 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
ARCN1 archain 1 372 B4E1X2 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ARF1 ADP-ribosylation factor 1 375 Q8N6T3 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ARID1B AT rich interactive domain 1B (SWI1-like) 57492 Q8NFD5 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ARL8A ADP-ribosylation factor-like 8A 127829 Q96BM9 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ARNT2 aryl-hydrocarbon receptor nuclear translocator 2 9915 Q9HBZ2 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ATN1 atrophin 1 1822 P54259 Y2H; GST; IP/WB
Lim J , et al. 2006
ATP1A1 ATPase, Na+/K+ transporting, alpha 1 polypeptide 476 P05023 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ATP6V1G2 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2 534 Q2L6F8 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ATP9B ATPase, class II, type 9B 374868 B3KSI8 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ATXN1 ataxin 1 6310 P54253 Y2H; GST; IP/WB
Lim J , et al. 2006
ATXN10 ataxin 10 25814 Q9UBB4 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ATXN2 ataxin 2 6311 Q99700 Y2H; IP/WB; qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Shibata H , et al. 2000
BCAN brevican 63827 Q96GW7 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
BLOC1S6 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin 26258 B3KY40 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
BRD2 bromodomain containing 2 6046 P25440 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
BSG basigin (Ok blood group) 682 P35613 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CALCA calcitonin-related polypeptide alpha 796 P06881 Transfection analyses; UV-cross-linking assay
qRT-PCR; in vitro binding assay
Zhou HL , et al. 2006
CALU calumenin 813 D6QS54 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CANX calnexin 821 P27824 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CAPN5 calpain 5 726 O15484 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CBX3 chromobox homolog 3 11335 Q13185 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CCT7 chaperonin containing TCP1, subunit 7 (eta) 10574 Q99832 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CD81 CD81 molecule 975 P60033 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CDC123 cell division cycle 123 homolog (S. cerevisiae) 8872 O75794 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CDCA7 cell division cycle associated 7 83879 Q9BWT1 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CELF3 CUGBP, Elav-like family member 3 11189 Q5SZQ8 Y2H
Lim J , et al. 2006
CELSR2 cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila) 1952 Q9HCU4 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CFI complement factor I 3426 A8K3L0 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CHL1 cell adhesion molecule with homology to L1CAM (close homolog of L1) 10752 O00533 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CLCN3 chloride channel, voltage-sensitive 3 1182 B7Z932 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CLIP2 CAP-GLY domain containing linker protein 2 7461 Q9UDT6 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CLIP3 CAP-GLY domain containing linker protein 3 25999 Q96DZ5 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CLSTN2 calsyntenin 2 64084 Q9H4D0 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CLU clusterin 1191 P10909 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CNNM2 cyclin M2 54805 Q9H8M5 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
COPB1 coatomer protein complex, subunit beta 1 1315 P53618 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
COPS8 COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) 10920 Q53QS9 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CPEB2 cytoplasmic polyadenylation element binding protein 2 132864 E7EPM3 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CSDE1 cold shock domain containing E1, RNA-binding 7812 O75534 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CSNK1A1 casein kinase 1, alpha 1 1452 P48729 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CTNNB1 catenin (cadherin-associated protein), beta 1, 88kDa 1499 Q9WU82 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CTSD cathepsin D 1509 P07339 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CTTN cortactin 2017 Q14247 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CUL4A cullin 4A 8451 Q13619 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CYB5R3 cytochrome b5 reductase 3 1727 P00387 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
CYFIP2 Cytoplasmic FMRP Interacting Protein 2 26999 Q96F07 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
DBN1 drebrin 1 1627 Q16643 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
DCUN1D2 DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae) 55208 Q6PH85 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
DDB1 damage-specific DNA binding protein 1, 127kDa 1642 Q16531 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
DDOST dolichyl-diphosphooligosaccharide--protein glycosyltransferase 1650 P39656 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
DDX17 DEAD (Asp-Glu-Ala-Asp) box helicase 17 10521 Q59F66 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
DDX5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 1655 P17844 IP; MudPIT
Damianov A , et al. 2016
DDX6 DEAD (Asp-Glu-Ala-Asp) box helicase 6 1656 P26196 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
DGUOK deoxyguanosine kinase 1716 E5KSL5 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
DIAPH1 diaphanous homolog 1 (Drosophila) 1729 E9PEZ2 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
DLX6-AS1 DLX6 antisense RNA 1 285987 N/A qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
DMRTB1 DMRT-like family B with proline-rich C-terminal, 1 63948 Q96MA1 Y2H
Lim J , et al. 2006
DNM2 dynamin 2 1785 P50570 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
DOCK7 dedicator of cytokinesis 7 85440 Q96N67 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
DST dystonin 667 Q03001 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
DVL2 dishevelled, dsh homolog 2 (Drosophila) 1856 O14641 Y2H
Lim J , et al. 2006
DYRK4 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 8798 Q9NR20 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
EEF1A1 eukaryotic translation elongation factor 1 alpha 1 1915 P68104 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
EEF2 eukaryotic translation elongation factor 2 1938 P13639 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
EIF2AK1 eukaryotic translation initiation factor 2-alpha kinase 1 27102 Q9BQI3 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
EIF3A eukaryotic translation initiation factor 3, subunit A 8661 Q14152 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
EIF3L eukaryotic translation initiation factor 3, subunit L 51386 B4DYB2 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
EIF4G2 eukaryotic translation initiation factor 4 gamma, 2 1982 P78344 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ELN elastin 2006 P15502 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
EP400 E1A binding protein p400 57634 Q96L91 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
EPB41 erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) 2035 P11171 Transfection analyses; SELEX analysis; qRT-PCR; in vitro binding assay
Ponthier JL , et al. 2006
EPB41L1 erythrocyte membrane protein band 4.1-like 1 2036 B7Z653 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
EPB41L2 erythrocyte membrane protein band 4.1-like 2 2037 O43491 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
EPHB2 EPH receptor B2 2048 P29323 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
EXOC1 exocyst complex component 1 55763 Q9NV70 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
EZR ezrin 7430 P15311 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
FADS1 fatty acid desaturase 1 3992 O60427 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
FAM126A family with sequence similarity 126, member A 84668 Q9BYI3 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
FAM190B family with sequence similarity 190, member B 54462 Q9H7U1 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
FAM96B family with sequence similarity 96, member B 51647 Q9Y3D0 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
FBLN1 fibulin 1 2192 P23142 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
FDFT1 farnesyl-diphosphate farnesyltransferase 1 2222 P37268 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
FERMT2 fermitin family member 2 10979 Q96AC1 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
FEZ2 fasciculation and elongation protein zeta 2 (zygin II) 9637 Q9UHY8 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
FLNA filamin A, alpha 2316 P21333 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
FLOT2 flotillin 2 2319 Q14254 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
FMNL3 formin-like 3 91010 Q8IVF7 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
FMR1 fragile X mental retardation 1 2332 G8JLE9 PAR-CLIP
Ascano M Jr , et al. 2012
FOXM1 forkhead box M1 2305 Q08050 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
FSTL1 follistatin-like 1 11167 Q12841 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
FUBP1 far upstream element (FUSE) binding protein 1 8880 Q96AE4 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
GAB1 GRB2-associated binding protein 1 2549 Q13480 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
GCA grancalcin, EF-hand calcium binding protein 25801 P28676 Y2H
Lim J , et al. 2006
GLT8D1 glycosyltransferase 8 domain containing 1 55830 Q68CQ7 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
GNB2 guanine nucleotide binding protein (G protein), beta polypeptide 2 2783 P62879 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
GNS glucosamine (N-acetyl)-6-sulfatase 2799 P15586 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
GOLGA2 golgin A2 2801 Q08379 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
GPM6B glycoprotein M6B 2824 Q13491 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
GPR126 G protein-coupled receptor 126 57211 Q86SQ4 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
GRINA glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) 2907 Q7Z429 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
GTF2I general transcription factor IIi 2969 P78347 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
H2AFY H2A histone family, member Y 9555 O75367 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
HMG20B high mobility group 20B 10362 Q9P0W2 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase 3156 P04035 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
HNRNP H1 heterogeneous nuclear ribonucleoprotein H1 (H) 3187 P31943 IP; MS; IP/WB
Sun S , et al. 2011
HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 3178 P09651 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) 3183 P07910 IP; MudPIT; Rate-zonal centrifugation
Damianov A , et al. 2016
HNRNPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) 3184 Q14103 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
HNRNPF eterogeneous nuclear ribonucleoprotein F 3185 P52597 Y2H
Lim J , et al. 2006
HNRNPF eterogeneous nuclear ribonucleoprotein F 3185 P52597 IP; MudPIT
Damianov A , et al. 2016
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 3187 P31943 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) 3187 P31943 IP; MudPIT; Rate-zonal centrifugation
Damianov A , et al. 2016
HNRNPM heterogeneous nuclear ribonucleoprotein M 4670 P52272 IP; MudPIT; Rate-zonal centrifugation
Damianov A , et al. 2016
HNRNPUL2 heterogeneous nuclear ribonucleoprotein U-like 2 221092 Q1KMD3 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
HNRNPUL2 heterogeneous nuclear ribonucleoprotein U-like 2 221092 Q1KMD3 IP; MudPIT
Damianov A , et al. 2016
HSF2 heat shock transcription factor 2 3298 Q03933 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
HSFX1 heat shock transcription factor family, X linked 1 100506164 Q9UBD0 Y2H
Lim J , et al. 2006
HSP90B1 heat shock protein 90kDa beta (Grp94), member 1 7184 P14625 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
IDH2 isocitrate dehydrogenase 2 (NADP+), mitochondrial 3418 P48735 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
IGF2BP2 insulin-like growth factor 2 mRNA binding protein 2 10644 Q9Y6M1 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ILF2 interleukin enhancer binding factor 2 3608 Q12905 IP; MudPIT; Rate-zonal centrifugation
Damianov A , et al. 2016
ILF3 interleukin enhancer binding factor 3, 90kDa 3609 Q12906 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ILF3 interleukin enhancer binding factor 3, 90kDa 3609 Q12906 IP; MudPIT; Rate-zonal centrifugation
Damianov A , et al. 2016
ITGB1 integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) 3688 P05556 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ITGB4 integrin, beta 4 3691 P16144 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
KIAA0319L KIAA0319-like 79932 Q8IZA0 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
KIAA0664 KIAA0664 23277 O75153 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
KIF21A kinesin family member 21A 55605 B9EGE4 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
KIFAP3 kinesin-associated protein 3 22920 Q92845 Y2H
Lim J , et al. 2006
KITLG KIT ligand 4254 P21583 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
LDB1 LIM domain binding 1 8861 Q86U70 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
LDHB lactate dehydrogenase B 3945 P07195 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
LPHN2 latrophilin 2 23266 O95490 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
LPHN3 latrophilin 3 23284 E9PE04 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
LRP8 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 7804 Q14114 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
LRPAP1 low density lipoprotein receptor-related protein associated protein 1 4043 P30533 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
LTBP3 latent transforming growth factor beta binding protein 3 4054 Q9NS15 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
LZTS2 leucine zipper, putative tumor suppressor 2 84445 Q9BRK4 Y2H
Lim J , et al. 2006
MACF1 microtubule-actin crosslinking factor 1 23499 Q9UPN3 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MAGED1 melanoma antigen family D, 1 9500 Q9Y5V3 Y2H
Lim J , et al. 2006
MAGI1 membrane associated guanylate kinase, WW and PDZ domain containing 1 9223 Q96QZ7 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 9863 Q86UL8 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MAP3K7 mitogen-activated protein kinase kinase kinase 7 6885 O43318 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 9448 O95819 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MAP7D1 MAP7 domain containing 1 55700 Q3KQU3 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
MATR3 matrin 3 9782 P43243 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MATR3 matrin 3 9782 P43243 IP; MudPIT
Damianov A , et al. 2016
MBNL1 muscleblind-like splicing regulator 1 4154 Q9NR56 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
MBNL2 muscleblind-like splicing regulator 2 10150 Q5VZF2 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
MBNL3 muscleblind-like splicing regulator 3 55796 Q9NUK0 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
MCAT malonyl CoA:ACP acyltransferase (mitochondrial) 27349 B0QY72 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MCM4 minichromosome maintenance complex component 4 4173 P33991 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MEIS2 Meis homeobox 2 4212 B7Z6F6 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MFF mitochondrial fission factor 56947 Q9GZY8 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MFSD1 major facilitator superfamily domain containing 1 64747 C9JS94 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MGRN1 mahogunin ring finger 1, E3 ubiquitin protein ligase 23295 O60291 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MLEC malectin 9761 Q14165 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MRC2 mannose receptor, C type 2 9902 Q9UBG0 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MSN moesin 4478 P26038 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MTCH1 mitochondrial carrier 1 23787 Q9NZJ7 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MYEF2 myelin expression factor 2 50804 Q9P2K5 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
MYEF2 myelin expression factor 2 50804 Q9P2K5 IP; MudPIT; Rate-zonal centrifugation
Damianov A , et al. 2016
MYL6 myosin, light chain 6, alkali, smooth muscle and non-muscle 4637 P60660 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NCAM1 neural cell adhesion molecule 1 4684 P13591 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NCAN neurocan 1463 O14594 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NCL nucleolin 4691 B3KM80 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NCOR1 nuclear receptor corepressor 1 9611 O75376 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 23327 Q96PU5 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NEO1 neogenin 1 4756 Q59FP8 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NFE2L1 nuclear factor (erythroid-derived 2)-like 1 4779 Q14494 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NFIX nuclear factor I/X (CCAAT-binding transcription factor) 4784 Q14938 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NLGN3 neuroligin 3 54413 D3DVV1 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) 26155 Q9Y3T9 Y2H
Lim J , et al. 2006
NONO non-POU domain containing, octamer-binding 4841 Q15233 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NOTCH1 notch 1 4851 P46531 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NOTCH3 notch 3 4854 Q9UM47 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) 4869 P06748 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NRAS neuroblastoma RAS viral (v-ras) oncogene homolog 4893 P01111 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NRD1 nardilysin (N-arginine dibasic convertase) 4898 O43847 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
NUMA1 nuclear mitotic apparatus protein 1 4926 Q14980 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
NUMBL numb homolog (Drosophila)-like 9253 Q9Y6R0 Y2H; GST; IP/WB
Lim J , et al. 2006
OAZ2 ornithine decarboxylase antizyme 2 4947 O95190 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PABPC1 poly(A) binding protein, cytoplasmic 1 26986 P11940 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PAICS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase 10606 P22234 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PAM peptidylglycine alpha-amidating monooxygenase 5066 P19021 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PBRM1 polybromo 1 55193 Q86U86 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
PBX1 pre-B-cell leukemia homeobox 1 5087 P40424 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
PCBP4 poly(rC) binding protein 4 57060 P57723 Y2H
Lim J , et al. 2006
PCM1 pericentriolar material 1 5108 Q15154 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PDIA3 protein disulfide isomerase family A, member 3 2923 P30101 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PDZD11 PDZ domain containing 11 51248 Q5EBL8 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PEPD peptidase D 5184 P12955 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PFN2 profilin 2 5217 P35080 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PGD phosphogluconate dehydrogenase 5226 A8K2Y9 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PIGX phosphatidylinositol glycan anchor biosynthesis, class X 54965 Q8TBF5 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PJA2 praja ring finger 2, E3 ubiquitin protein ligase 9867 O43164 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PLEKHA3 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3 65977 Q9HB20 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PLEKHM2 pleckstrin homology domain containing, family M (with RUN domain) member 2 23207 Q8IWE5 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PLOD2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 5352 O00469 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
PML promyelocytic leukemia 5371 P29590 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
POGZ pogo transposable element with ZNF domain 23126 B4DTP8 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PPA2 pyrophosphatase (inorganic) 2 27068 Q9H2U2 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PPP1R12A protein phosphatase 1, regulatory subunit 12A 4659 B2RAH5 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
PPP2R1A protein phosphatase 2, regulatory subunit A, alpha 5518 A8K7B7 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha 5573 P10644 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PRKCA protein kinase C, alpha 5578 P17252 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PRKD1 protein kinase D1 5587 Q15139 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PRPF8 PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) 10594 Q6P2Q9 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PRRC2A proline-rich coiled-coil 2A 7916 P48634 Y2H
Lim J , et al. 2006
PSAP prosaposin 5660 P07602 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7 5688 O14818 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PSMB4 proteasome (prosome, macropain) subunit, beta type, 4 5692 P28070 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PSMC5 proteasome (prosome, macropain) 26S subunit, ATPase, 5 5705 P62195 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PSMD2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 5708 Q13200 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PSMD7 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 5713 P51665 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PSMF1 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) 9491 Q92530 Y2H; GST; IP/WB
Lim J , et al. 2006
PTBP2 polypyrimidine tract binding protein 2 58155 Q9UKA9 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
PTK2 PTK2 protein tyrosine kinase 2 5747 Q05397 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PTPLAD1 protein tyrosine phosphatase-like A domain containing 1 51495 Q9P035 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PTPMT1 protein tyrosine phosphatase, mitochondrial 1 114971 E9PAT8 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PTPN11 protein tyrosine phosphatase, non-receptor type 11 5781 Q06124 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PTPN13 protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) 5783 O14603 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PTPRA protein tyrosine phosphatase, receptor type, A 5786 P18433 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PTPRS protein tyrosine phosphatase, receptor type, S 5802 Q13332 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PTPRZ1 protein tyrosine phosphatase, receptor-type, Z polypeptide 1 5803 B4DFE7 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
PYGB phosphorylase, glycogen; brain 5834 P11216 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
QKI quaking homolog, KH domain RNA binding (mouse) 9444 Q96PU8 Y2H; GST; IP/WB
Lim J , et al. 2006
RALGAPA2 Ral GTPase activating protein, alpha subunit 2 (catalytic) 57186 Q2PPJ7 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
RALGPS2 Ral GEF with PH domain and SH3 binding motif 2 55103 Q86X27 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
RALY RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) 22913 Q9UKM9 IP; MS; IP/WB
Sun S , et al. 2011
RBBP4 retinoblastoma binding protein 4 5928 Q09028 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
RBFOX2 RNA binding protein, fox-1 homolog (C. elegans) 2 23543 O43251 Y2H; IP/WB
Lim J , et al. 2006
RBM24 RNA binding motif protein 24 221662 Q9BX46 Y2H; GST
Lim J , et al. 2006
RHOBTB3 Rho-related BTB domain containing 3 22836 O94955 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
RHOXF2 Rhox homeobox family, member 2 84528 Q9BQY4 Y2H; GST; IP/WB
Lim J , et al. 2006
RNF130 ring finger protein 130 55819 Q86XS8 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
RPL3 ribosomal protein L3 6122 P39023 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
RPL7 ribosomal protein L7 6129 P18124 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
RPL8 ribosomal protein L8 6132 P62917 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
RPN2 ribophorin II 6185 P04844 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
RPS17 ribosomal protein S17 6218 P08708 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
RPS3 ribosomal protein S3 6188 P23396 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
RPSA ribosomal protein SA 3921 P08865 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
SBDSP Shwachman-Bodian-Diamond syndrome 51119 Q9Y3A5 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
SEC24B SEC24 family, member B (S. cerevisiae) 10427 O95487 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
SESN3 sestrin 3 143686 P58005 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
SFRS6 serine/arginine-rich splicing factor 6 6431 Q13247 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
SGTA small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha 6449 O43765 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
SLC35B1 solute carrier family 35, member B1 10237 P78383 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
SLC39A7 solute carrier family 39 (zinc transporter), member 7 7922 Q92504 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) 23020 O75643 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
SNRPN small nuclear ribonucleoprotein polypeptide N 6638 P63162 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
SORT1 sortilin 1 6272 Q99523 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive) 6687 Q9UQ90 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
SPTAN1 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) 6709 Q13813 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
SRPK2 SRSF protein kinase 2 6733 P78362 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
ST13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) 6767 P50502 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
STAG2 stromal antigen 2 10735 Q6MZP3 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
STOML2 stomatin (EPB72)-like 2 30968 Q9UJZ1 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
SULF1 sulfatase 1 23213 Q8IWU6 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein 10492 B7Z645 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
TAF15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa 8148 Q92804 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 26115 Q9HCD6 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
TBX3 T-box 3 6926 O15119 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
TCP1 t-complex 1 6950 P17987 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
TEAD1 TEA domain family member 1 (SV40 transcriptional enhancer factor) 7003 A4FUP2 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
TFG TRK-fused gene 10342 Q92734 IP; MS; IP/WB
Sun S , et al. 2011
TIMP2 TIMP metallopeptidase inhibitor 2 7077 P16035 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
TKT transketolase 7086 P29401 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
TM9SF2 transmembrane 9 superfamily member 2 9375 Q99805 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
TMBIM6 transmembrane BAX inhibitor motif containing 6 7009 F8W034 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
TNIP1 TNFAIP3 interacting protein 1 10318 Q15025 Y2H
Lim J , et al. 2006
TOP2A topoisomerase (DNA) II alpha 170kDa 7153 P11388 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
TTC3 tetratricopeptide repeat domain 3 7267 P53804 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
TUBA1C tubulin, alpha 1c 84790 Q9BQE3 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
TUBB4A tubulin, beta 4A class IVa 10382 P04350 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
UAP1 UDP-N-acteylglucosamine pyrophosphorylase 1 6675 Q16222 in silico target prediction; Splicing microarray
Zhang C , et al. 2008
UBA1 ubiquitin-like modifier activating enzyme 1 7317 P22314 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
UBAP2 ubiquitin associated protein 2 55833 Q5T6F2 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
UBC ubiquitin C 7316 P63279 MS
Wagner SA , et al. 2011
UBTF upstream binding transcription factor, RNA polymerase I 7343 P17480 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
UCHL1 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) 7345 P09936 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
UQCRH ubiquinol-cytochrome c reductase hinge protein 7388 P07919 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) 9875 O60287 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
USP22 ubiquitin specific peptidase 22 23326 Q9UPT9 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
VIM vimentin 7431 P08670 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
VPS13D vacuolar protein sorting 13 homolog D (S. cerevisiae) 55187 Q5THJ4 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
WDR26 WD repeat domain 26 80232 Q9H7D7 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
WDR6 WD repeat domain 6 11180 Q9NNW5 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
WNK1 WNK lysine deficient protein kinase 1 65125 Q9H4A3 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
WSB1 WD repeat and SOCS box containing 1 26118 Q9Y6I7 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
XRCC6 X-ray repair complementing defective repair in Chinese hamster cells 6 2547 P12956 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
YIPF3 Yip1 domain family, member 3 25844 Q9GZM5 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 7534 P63104 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ZFR zinc finger RNA binding protein 51663 Q05D65 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
ZMYND8 zinc finger, MYND-type containing 8 23613 Q9ULU4 qRT-PCR; IP/WB; in situ hybridization; in silico target prediction
Fogel BL , et al. 2012
5730409E04Rik RIKEN cDNA 5730409E04Rik gene 230757 Q8BP99 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Abi1 abl-interactor 1 11308 Q8CBW3 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Actn1 actinin, alpha 1 81634 Q9Z1P2 Transfection analyses; Northern blot
Jin Y , et al. 2003
Adarb1 adenosine deaminase, RNA-specific, B1 110532 Q91ZS8 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Adnp activity-dependent neuroprotective protein 11538 Q9Z103 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Ap1ar adaptor-related protein complex 1 associated regulatory protein 211556 E9PYF7 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Apba2 amyloid beta (A4) precursor protein-binding, family A, member 2 11784 P98084 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Apc adenomatosis polyposis coli 11789 Q61315 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Aplp2 amyloid beta (A4) precursor-like protein 2 11804 Q06335 CLIP; RNA immunoprecipitation (RIP); RNA-Seq
Damianov A , et al. 2016
Armc1 armadillo repeat containing 1 74252 Q9D7A8 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Armt1 acidic residue methyltransferase 1 73419 A6H630 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Arpp19 cAMP-regulated phosphoprotein 19 59046 P56212 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Atp1a1 ATPase, Na+/K+ transporting, alpha 1 polypeptide 11928 Q8VDN2 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Atp2b1 ATPase, Ca++ transporting, plasma membrane 1 67972 G5E829 CLIP; RNA immunoprecipitation (RIP); RNA-Seq
Damianov A , et al. 2016
Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 11941 Q9R0K7 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
ATP5C1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 509 P36542 Transfection analyses; Northern blot
Jin Y , et al. 2003
Atxn7l3 ataxin 7-like 3 217218 A2AWT3 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Auts2 autism susceptibility candidate 2 319974 Q6PED7 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
B4galt6 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 56386 Q9WVK5 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Bin1 Myc box-dependent-interacting protein 1 30948 O08539 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
C1qtnf4 C1q and tumor necrosis factor related protein 4 67445 Q8R066 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Cacna1c calcium channel, voltage-dependent, L type, alpha 1C subunit 12288 Q01815 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Cacna1c calcium channel, voltage-dependent, L type, alpha 1C subunit 24239 A0SLC4 Transfection analyses
Tang ZZ , et al. 2009
Cacna1d Voltage-dependent L-type calcium channel subunit alpha-1D 12289 Q99246 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Cacna1g calcium channel, voltage-dependent, T type, alpha 1G subunit 12291 E9PWL1 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Cacnb4 calcium channel, voltage-dependent, beta 4 subunit 12298 Q8R0S4 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Cadm1 cell adhesion molecule 1 54725 Q8R5M8 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Cadps2 Ca2+-dependent activator protein for secretion 2 320405 Q8BYR5 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
CALCA calcitonin-related polypeptide alpha 796 P06881 Transfection analyses; UV-cross-linking assay
qRT-PCR; in vitro binding assay
Zhou HL , et al. 2006
Camk2a calcium/calmodulin-dependent protein kinase II alpha 12322 P11798 RNA immunoprecipitation (RIP); RNA-seq; Luciferase reporter assay
Lee JA , et al. 2015
Camk2b calcium/calmodulin-dependent protein kinase II, beta 12323 P28652 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Camk2g calcium/calmodulin-dependent protein kinase II gamma 12325 Q923T9 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Camk4 calcium/calmodulin-dependent protein kinase IV 12326 P08414 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Camkv CaM kinase-like vesicle-associated 235604 Q3UHL1 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Camta1 calmodulin binding transcription activator 1 100072 A2A891 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Camta1 calmodulin binding transcription activator 1 100072 A2A891 RNA immunoprecipitation (RIP); RNA-seq; Luciferase reporter assay
Lee JA , et al. 2015
Camta1 calmodulin binding transcription activator 1 100072 A2A891 CLIP; RNA immunoprecipitation (RIP); RNA-Seq
Damianov A , et al. 2016
Caprin1 cell cycle associated protein 1 53872 Q60865 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Capza2 capping protein (actin filament) muscle Z-line, alpha 2 12343 P47754 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Ccnd2 cyclin D2 12444 P30280 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Clip3 CAP-GLY domain containing linker protein 3 76686 B9EHT4 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Cltc clathrin, heavy polypeptide (Hc) 67300 Q68FD5 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Cnih1 cornichon family AMPA receptor auxiliary protein 1 12793 O35372 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Cnr1 cannabinoid receptor 1 (brain) 12801 P47746 CLIP; RNA immunoprecipitation (RIP); RNA-Seq
Damianov A , et al. 2016
Cntnap1 contactin associated protein-like 1 53321 O54991 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Cplx2 complexin 2 12890 P84086 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Cpne4 copine IV 74020 Q8BLR2 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Cpsf2 cleavage and polyadenylation specific factor 2 51786 O35218 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Csnk1d casein kinase 1, delta 104318 Q9DC28 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Dnm1l Dynamin-1-like protein 74006 Q8K1M6 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Dpp10 dipeptidylpeptidase 10 269109 Q6NXK7 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Dzank1 double zinc ribbon and ankyrin repeat domains 1 241688 Q8C008 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Elovl4 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4 83603 Q9EQC4 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Ep400 E1A binding protein p400 75560 Q8CHI8 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Eps15 epidermal growth factor receptor pathway substrate 15 13858 P42567 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Erg Transcriptional regulator ERG 13876 P81270 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Ewsr1 Ewing sarcoma breakpoint region 1 14030 Q61545 qRT-PCR
Underwood JG , et al. 2005
Fam131a family with sequence similarity 131, member A 78408 Q8BWU3 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Fam131b family with sequence similarity 131, member B 76156 Q3TY60 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Fam163b family with sequence similarity 163, member B 109349 Q8BUM6 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Fam168b family with sequence similarity 168, member B 214469 G3UWF0 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Fat1 FAT tumor suppressor homolog 1 (Drosophila) 14107 F2Z4A3 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Fgfr2 fibroblast growth factor receptor 2 25022 F1LNW0 qRT-PCR; WB
Baraniak AP , et al. 2006
Flot2 flotillin 2 14252 Q60634 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Fn1 fibronectin 1 25661 G3V7W2 Northern blot
Jin Y , et al. 2003
FOXP2 forkhead box P2 114142 P58463 ChIP
Vernes SC , et al. 2011
Fpgt fucose-1-phosphate guanylyltransferase 75540 G5E8F4 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Gabrg2 Gamma-aminobutyric acid receptor subunit gamma-2 14406 P22723 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Gde1 glycerophosphodiester phosphodiesterase 1 56209 Q9JL56 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Gpd2 glycerol phosphate dehydrogenase 2, mitochondrial 14571 Q64521 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Gphn Gephyrin 268566 Q8BUV3 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Gpr158 G protein-coupled receptor 158 241263 Q8C419 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Gria3 glutamate receptor, ionotropic, AMPA3 (alpha 3) 53623 Q9Z2W9 CLIP; RNA immunoprecipitation (RIP); RNA-Seq
Damianov A , et al. 2016
Grin1 glutamate receptor, ionotropic, NMDA1 (zeta 1) 14810 P35438 Transfection analyses
Lee JA , et al. 2009
Grip1 glutamate receptor interacting protein 1 74053 Q925T6 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Grm5 glutamate receptor, metabotropic 5 108071 Q3UVX5 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Gsn Gelsolin 227753 P13020 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Gtf2i General transcription factor II-I 14886 Q9ESZ8 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Hpca hippocalcin 15444 P84075 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Kcna1 Potassium voltage-gated channel subfamily A member 1 16485 P16388 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Kcnip1 Kv channel-interacting protein 1 70357 Q9JJ57 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Kcnma1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 16531 Q08460 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Kcnq3 potassium voltage-gated channel, subfamily Q, member 3 110862 Q8K3F6 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Kcnq5 potassium voltage-gated channel, subfamily Q, member 5 226922 Q9JK45 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Klc2 kinesin light chain 2 16594 O88448 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Klhl2 kelch-like 2, Mayven 77113 Q8JZP3 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Klhl23 kelch-like 23 277396 Q6GQU2 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Limd2 LIM domain containing 2 67803 Q8BGB5 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Lin7c lin-7 homolog C (C. elegans) 22343 A2ARI2 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Lrp11 low density lipoprotein receptor-related protein 11 237253 Q8CB67 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Lrrc7 leucine rich repeat containing 7 242274 Q80TE7 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Lsm11 U7 snRNP-specific Sm-like protein LSM11 72290 Q8BUV6 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Mapk10 mitogen-activated protein kinase 10 26414 Q61831 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Mapk9 mitogen-activated protein kinase 9 26420 Q9WTU6 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Mcts1 malignant T cell amplified sequence 1 68995 Q9DB27 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Med9 mediator complex subunit 9 192191 Q8VCS6 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Mef2c myocyte enhancer factor 2C 17260 Q8CFN5 Transfection analyses
Hakim NH , et al. 2010
Mpv17l Mpv17 transgene, kidney disease mutant-like 93734 Q99MS3 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Myh10 myosin, heavy polypeptide 10, non-muscle 77579 Q61879 EMSA; Transfection analyses; qRT-PCR; in vitro binding assay
Nakahata S and Kawamoto S 2005
Nat8l N-acetyltransferase 8-like 269642 Q3UGX3 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Ncoa1 nuclear receptor coactivator 1 17977 P70365 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Nefm neurofilament, medium polypeptide 18040 P08553 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Neurod2 neurogenic differentiation 2 18013 Q62414 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Nfia Nuclear factor 1 A-type 18027 Q02780 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Nptx1 neuronal pentraxin 1 18164 Q62443 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Npy neuropeptide Y 109648 P57774 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Nras neuroblastoma ras oncogene 18176 P08556 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Nrcam Neuronal cell adhesion molecule 319504 Q810U4 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Nrxn1 neurexin 1 18189 Q9CS84 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Nrxn3 neurexin III 18191 Q6P9K9 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Nt5dc3 5'-nucleotidase domain containing 3 103466 Q3UHB1 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Ntng1 netrin G1 80883 Q8R4G0 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Ola1 Obg-like ATPase 1 67059 Q9CZ30 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Pak1 p21 protein (Cdc42/Rac)-activated kinase 1 18479 O88643 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Pclo piccolo (presynaptic cytomatrix protein) 26875 Q9QYX7 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Pcp4l1 Purkinje cell protein 4-like 1 66425 Q6W8Q3 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Phyhipl phytanoyl-CoA hydroxylase interacting protein-like 70911 Q8BGT8 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Pnoc prepronociceptin 18155 Q64387 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Polr3k polymerase (RNA) III (DNA directed) polypeptide K 67005 Q9CQZ7 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Ppfia1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 233977 B2RXQ2 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Ppp1r9a protein phosphatase 1, regulatory (inhibitor) subunit 9A 243725 Q7TN74 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Ppp3cb protein phosphatase 3, catalytic subunit, beta isozyme 19056 P48453 CLIP; RNA immunoprecipitation (RIP); RNA-Seq
Damianov A , et al. 2016
Ppp3r1 protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I) 19058 Q63810 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Prrt2 proline-rich transmembrane protein 2 69017 E9PUL5 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Prune2 Protein prune homolog 2 353211 Q52KR3 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Rab40b Rab40B, member RAS oncogene family 217371 Q8VHP8 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Rap1gds1 RAP1, GTP-GDP dissociation stimulator 1 229877 E9Q912 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Rassf5 Ras association (RalGDS/AF-6) domain family member 5 54354 Q5EBH1 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Rbfox1 RNA binding protein, fox-1 homolog (C. elegans) 1 268859 Q9JJ43 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Rgs17 regulator of G-protein signaling 17 56533 Q9QZB0 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Rgs7bp regulator of G-protein signalling 7 binding protein 52882 Q8BQP9 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Rgs8 regulator of G-protein signaling 8 67792 Q8BXT1 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Rnf165 ring finger protein 165 225743 E9QAU8 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Robo2 Roundabout homolog 2 268902 Q7TPD3 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Rph3a rabphilin 3A 19894 P47708 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Rtn3 reticulon 3 20168 Q9ES97 CLIP; RNA immunoprecipitation (RIP); RNA-Seq
Damianov A , et al. 2016
Scn2a1 sodium channel, voltage-gated, type II, alpha 1 110876 B1AWN6 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Scn8a sodium channel, voltage-gated, type VIII, alpha 20273 Q9WTU3 qRT-PCR; HITS-CLIP
O'Brien JE , et al. 2011
Scn8a sodium channel, voltage-gated, type VIII, alpha 20273 Q9WTU3 CLIP; RNA immunoprecipitation (RIP); RNA-Seq
Damianov A , et al. 2016
Serbp1 serpine1 mRNA binding protein 1 66870 Q9CY58 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Setd7 SET domain containing (lysine methyltransferase) 7 73251 Q8VHL1 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Shank3 SH3/ankyrin domain gene 3 58234 Q4ACU6 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Shroom2 shroom family member 2 110380 A2ALU4 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Skil SKI-like 20482 Q60665 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Slc24a2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 76376 Q14BI1 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Slc38a10 Putative sodium-coupled neutral amino acid transporter 10 72055 Q5I012 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Slc4a10 Sodium-driven chloride bicarbonate exchanger 94229 Q5DTL9 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Slmap sarcolemma associated protein 83997 Q3URD3 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Smg7 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) 226517 Q5RJH6 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Smpd3 sphingomyelin phosphodiesterase 3, neutral 58994 Q9JJY3 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Snap25 synaptosomal-associated protein 25 20614 P60879 CLIP; RNA immunoprecipitation (RIP); RNA-Seq
Damianov A , et al. 2016
Snhg11 small nucleolar RNA host gene 11 319317 Q4G0K9 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Snx16 sorting nexin 16 74718 Q8C080 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Src Rous sarcoma oncogene 20779 P05480 qRT-PCR
Underwood JG , et al. 2005
St7 Suppressor of tumorigenicity 7 protein 64213 Q99M96 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Stac2 SH3 and cysteine rich domain 2 217154 Q8R1B0 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Stk39 STE20/SPS1-related proline-alanine-rich protein kinase 53416 Q9Z1W9 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Stxbp1 syntaxin binding protein 1 20910 O08599 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Sult4a1 sulfotransferase family 4A, member 1 29859 P63046 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Syne1 synaptic nuclear envelope 1 64009 Q6ZWR6 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Tmem179 transmembrane protein 179 104885 Q8BHH9 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Tnpo1 transportin 1 238799 Q8BFY9 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Tomm70a translocase of outer mitochondrial membrane 70 homolog A (yeast) 28185 Q9CZW5 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Trim37 tripartite motif-containing 37 68729 Q6PCX9 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Tsc2 tuberous sclerosis 2 22084 Q61037 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Ttn titin 22138 A2ASS6 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Ube2h Ubiquitin-conjugating enzyme E2 H 22214 P62257 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Ufd1l ubiquitin fusion degradation 1 like 22230 P70362 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Upf3b UPF3 regulator of nonsense transcripts homolog B (yeast) 68134 Q3ULL6 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Usp22 ubiquitin specific peptidase 22 216825 Q5DU02 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Vamp1 vesicle-associated membrane protein 1 22317 Q62442 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Vps29 vacuolar protein sorting 29 (S. pombe) 56433 Q9QZ88 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Vps35 vacuolar protein sorting 35 65114 Q9EQH3 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Vsnl1 visinin-like 1 26950 P62761 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Wasf1 WASP family 1 83767 Q8R5H6 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Zbtb18 zinc finger and BTB domain containing 18 30928 Q9WUK6 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Zfp239 zinc finger protein 239 22685 P24399 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
Zmat2 zinc finger, matrin type 2 66492 Q9CPW7 RNA immunoprecipitation (RIP); RNA-seq
Lee JA , et al. 2015
aret arrest 34648 Q8IP90 IP/WB; Immunofluorescence
Tastan OY , et al. 2010
RBFOX1 Ataxin-2 binding protein 1 39198 Q9VT98 IP/WB; in situ hybridization
Tastan OY , et al. 2010
xol-1 XO lethal protein 1 181061 Q23229 IP/WB
Nicoll M , et al. 1997

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