HELP     Sign In
Search

Relevance to Autism

Two de novo frameshift variants and one de novo missense variant in the RALGAPB gene were identified in ASD probands in De Rubeis et al., 2014 and Guo et al., 2018. A de novo nonsense variant in this gene had previously been identified in a patient with epileptic encephalopathy (Epi4K Consortium 2013). An additional de novo likely gene-disruptive variant in the RALGAPB gene was identified in an ASD proband from the SPARK cohort in Feliciano et al., 2019. Three additional de novo loss-of-function variants in the RALGAPB gene were reported in ASD probands from the SPARK cohort in Zhou et al., 2022; a two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in this report identified RALGAPB as a gene reaching study-wide significance based on 5,754 constraint genes (P < 8.69E-06).

Molecular Function

Non-catalytic subunit of the heterodimeric RalGAP1 and RalGAP2 complexes which act as GTPase activators for the Ras-like small GTPases RALA and RALB.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
De novo mutations in epileptic encephalopathies.
Epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
Excess of RALGAPB de novo variants in neurodevelopmental disorders
ASD
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Recent Recommendation
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1054R001 
 frameshift_variant 
 c.865_866del 
 p.Met289ValfsTer3 
 De novo 
  
  
 GEN1054R002 
 synonymous_variant 
 c.3423G>A 
 p.Thr1141= 
 De novo 
  
  
 GEN1054R003 
 frameshift_variant 
 c.1928dup 
 p.Asn643LysfsTer3 
 De novo 
  
  
 GEN1054R004 
 missense_variant 
 c.974A>G 
 p.Tyr325Cys 
 De novo 
  
 Simplex 
 GEN1054R005 
 missense_variant 
 c.2731G>A 
 p.Gly911Ser 
 Familial 
 Paternal 
 Simplex 
 GEN1054R006 
 missense_variant 
 c.523G>A 
 p.Asp175Asn 
 Familial 
 Maternal 
 Simplex 
 GEN1054R007 
 missense_variant 
 c.1010G>A 
 p.Arg337His 
 Familial 
 Paternal 
 Simplex 
 GEN1054R008 
 missense_variant 
 c.4376G>A 
 p.Arg1459Gln 
 Unknown 
 Not paternal 
 Simplex 
 GEN1054R009 
 stop_gained 
 c.3860C>G 
 p.Ser1287Ter 
 De novo 
  
 Simplex 
 GEN1054R010 
 frameshift_variant 
 c.1573dup 
 p.Cys525LeufsTer2 
 De novo 
  
  
 GEN1054R011 
 missense_variant 
 c.1238C>T 
 p.Thr413Met 
 De novo 
  
 Simplex 
 GEN1054R012 
 missense_variant 
 c.1791A>T 
 p.Glu597Asp 
 De novo 
  
 Simplex 
 GEN1054R013 
 synonymous_variant 
 c.3984G>C 
 p.Leu1328%3D 
 De novo 
  
  
 GEN1054R014 
 stop_gained 
 c.2413C>T 
 p.Arg805Ter 
 De novo 
  
  
 GEN1054R015 
 frameshift_variant 
 c.3259_3263del 
 p.Arg1087PhefsTer3 
 De novo 
  
  
 GEN1054R016 
 splice_site_variant 
 c.3818-1G>A 
  
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
20
Duplication
 1
 
20
Deletion
 1
 
20
Duplication
 1
 
20
Deletion-Duplication
 7
 

No Animal Model Data Available

No PIN Data Available
HELP
Copyright © 2017 MindSpec, Inc.