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Relevance to Autism

Two de novo variants (a nonsense variant and a synonymous variant predicted in PMID 26938441 to affect splicing regulation by altering an exonic splicing regulator) were observed in the RAB2A gene in ASD probands from the Simons Simplex Collection (Sanders et al., 2012; Iossifov et al., 2012). Evaluation of the statistical significance of observing multiple functional de novo variants in this gene, taking into account gene length and local sequence context to determine the expected number of variants, generated a p-value of 4.48E-06 (Takata et al., 2016).

Molecular Function

The protein encoded by this gene belongs to the Rab family, members of which are small molecular weight guanosine triphosphatases (GTPases) that contain highly conserved domains involved in GTP binding and hydrolysis. The Rabs are membrane-bound proteins, involved in vesicular fusion and trafficking. This protein is a resident of pre-Golgi intermediates, and is required for protein transport from the endoplasmic reticulum (ER) to the Golgi complex.

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References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
De novo mutations revealed by whole-exome sequencing are strongly associated with autism.
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
De novo gene disruptions in children on the autistic spectrum.
ASD
Support
Integrative genome-wide association analysis of cytoarchitectural abnormalities in the prefrontal cortex of psychiatric disorders.
Support
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
RAB2A Polymorphism impacts prefrontal morphology, functional connectivity, and working memory.
Recent Recommendation
De Novo Synonymous Mutations in Regulatory Elements Contribute to the Genetic Etiology of Autism and Schizophrenia.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN807R001 
 stop_gained 
 c.136C>T 
 p.Arg46Ter 
 De novo 
  
 Simplex 
 GEN807R002 
 synonymous_variant 
 c.129C>T 
 p.Phe43= 
 De novo 
  
 Simplex 
 GEN807R003 
 missense_variant 
 c.341C>T 
 p.Ala114Val 
 Unknown 
 Not maternal 
  
 GEN807R004 
 splice_site_variant 
 c.290+1G>A 
  
 Familial 
 Maternal 
  
 GEN807R005 
 missense_variant 
 c.549T>G 
 p.Ala183= 
 De novo 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
8
Duplication
 1
 
8
Duplication
 1
 
8
Deletion-Duplication
 13
 
8
Deletion
 1
 
8
Duplication
 1
 

No Animal Model Data Available

 

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