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Relevance to Autism

Trio-exome sequencing of 745 participants with NDD and/or epilepsy from the Center for Medical Genetics of the University Hospital Antwerp in Smal et al., 2024 identified a de novo missense variant in the RAB11FIP4 gene (NM_032932.6:c.1274G>A;p.Arg425Lys) in a patient presenting with autism spectrum disorder and global developmental delay. De novo frameshift variants in this gene had previously been reported in two male ASD probands from the SPARK cohort in Zhou et al., 2022. An intronic variant in RAB11FIP4 (SNP ID rs178850) was found to be associated with growth and neurological development phenotypes (lambda and Adaptive Bailey, respectively; P-value 2.02E-08) In a population of healthy infants studied in the Growing Up in Singapore Towards Healthy Outcomes (GUSTO) program in Uechi et al., 2020.

Molecular Function

The protein encoded by this gene interacts with RAB11 and is thought to be involved in bringing recycling endosome membranes to the cleavage furrow in late cytokinesis. Hypoxic conditions can lead to an upregulation of the encoded protein and enhance the metastatic potential of hepatocellular carcinoma.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Burden re-analysis of neurodevelopmental disorder cohorts for prioritization of candidate genes
ASD
DD
Positive Association
Complex genetic dependencies among growth and neurological phenotypes in healthy children: Towards deciphering developmental mechanisms
Growth and neurological development phenotypes
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1460R001 
 missense_variant 
 c.1274G>A 
 p.Arg425Lys 
 De novo 
  
 Simplex 
 GEN1460R002 
 frameshift_variant 
 c.1275_1276insAGAAACTG 
 p.Val426ArgfsTer18 
 De novo 
  
  
 GEN1460R003 
 frameshift_variant 
 c.1480del 
 p.Glu494ArgfsTer37 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Duplication
 2
 
17
Deletion-Duplication
 30
 
17
Deletion
 2
 
17
Deletion-Duplication
 78
 

No Animal Model Data Available

 

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