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Relevance to Autism

A rare duplication of the PTPRT gene was found in an individual with ASD (Christian et al., 2008).

Molecular Function

The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. This PTP possesses an extracellular region, a single transmembrane region, and two tandem intracellular catalytic domains, and thus represents a receptor-type PTP. The extracellular region contains a meprin-A5 antigen-PTP (MAM) domain, Ig-like and fibronectin type III-like repeats. The protein domain structure and the expression pattern of the mouse counterpart of this PTP suggest its roles in both signal transduction and cellular adhesion in the central nervous system. Two alternatively spliced transcript variants of this gene, which encode distinct proteins, have been reported.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Novel submicroscopic chromosomal abnormalities detected in autism spectrum disorder.
ASD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Unknown diagnosis
Support
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
ASD
Support
Regulation of dendritic arborization by BCR Rac1 GTPase-activating protein, a substrate of PTPRT.
Support
Integrating de novo and inherited variants in 42
ASD
Support
Synapse formation regulated by protein tyrosine phosphatase receptor T through interaction with cell adhesion molecules and Fyn.
Support
Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes.
ASD
Support
Genome-wide characteristics of de novo mutations in autism
ASD
Support
Genes that Affect Brain Structure and Function Identified by Rare Variant Analyses of Mendelian Neurologic Disease.
ID
Microcephaly, hypotonia
Recent Recommendation
Inactivation of the catalytic phosphatase domain of PTPRT/RPTP increases social interaction in mice.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN314R001 
 copy_number_gain 
  
  
 Familial 
  
  
 GEN314R002 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN314R003 
 missense_variant 
 c.2563G>A 
 p.Gly855Arg 
 De novo 
  
 Unknown 
 GEN314R004a 
 missense_variant 
 c.206T>C 
 p.Val69Ala 
 Familial 
  
 Simplex 
 GEN314R004b 
 intron_variant 
 c.1561-3C>T 
  
 Familial 
  
 Simplex 
 GEN314R005 
 missense_variant 
 c.796C>T 
 p.Arg266Cys 
 De novo 
  
 Simplex 
 GEN314R006 
 missense_variant 
 c.548G>A 
 p.Arg183Gln 
 De novo 
  
 Multiplex 
 GEN314R007 
 synonymous_variant 
 c.2916G>A 
 p.Trp972Ter 
 De novo 
  
  
 GEN314R008 
 missense_variant 
 c.2693C>T 
 p.Thr898Met 
 De novo 
  
  
 GEN314R009 
 missense_variant 
 c.42G>C 
 p.Arg14Ser 
 De novo 
  
  
 GEN314R010 
 missense_variant 
 c.1156C>A 
 p.Pro386Thr 
 De novo 
  
  
 GEN314R011 
 missense_variant 
 c.796C>T 
 p.Arg266Cys 
 De novo 
  
  
 GEN314R012 
 missense_variant 
 c.3386C>G 
 p.Thr1129Arg 
 Familial 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
20
Duplication
 1
 
20
Deletion-Duplication
 21
 
20
Duplication
 2
 
20
Deletion-Duplication
 2
 

No Animal Model Data Available

 

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