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Relevance to Autism

A de novo missense variant in the PTDSS1 gene was identified in an ASD proband from a multiplex family (Yuen et al., 2015), while an inherited splice-site variant in this gene was identified in an ASD proband from the iHART cohort (Ruzzo et al., 2019). Gracie et al., 2022 identified a 3-year-old female presenting with developmental delay and a formal diagnosis of autism and a de novo missense variant in the PTDSS1 gene; functional assessment of this variant demonstrated loss of catalytic activity compared to wild-type enzyme. A maternally-inherited multigenic duplication affecting the PTDSS1 gene had previously been identified in a male ASD proband born to non-consanguineous Lebanese parents in Soueid et al., 2016.

Molecular Function

The protein encoded by this gene catalyzes the formation of phosphatidylserine from either phosphatidylcholine or phosphatidylethanolamine. Phosphatidylserine localizes to the mitochondria-associated membrane of the endoplasmic reticulum, where it serves a structural role as well as a signaling role. Heterozygous de novo missense variants in this gene that result in gain-of-function of phosphatidylserine synthase 1 are a cause of Lenz-Majewski hyperostotic dwarfism (OMIM 151050), a rare condition characterized by intellectual disability, sclerosing bone dysplasia, distinct craniofacial and dental anomalies, loose skin, and distal limb anomalies, particularly brachydactyly and symphalangism (Sousa et al., 2014).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Whole-genome sequencing of quartet families with autism spectrum disorder.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
RYR2, PTDSS1 and AREG genes are implicated in a Lebanese population-based study of copy number variation in autism.
ASD
Support
Gain-of-function mutations in the phosphatidylserine synthase 1 (PTDSS1) gene cause Lenz-Majewski syndrome
Lenz-Majewski hyperostotic dwarfism
ID
Recent Recommendation
De novo loss-of-function variant in PTDSS1 is associated with developmental delay
ASD, DD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1307R001 
 missense_variant 
 c.1148A>G 
 p.Tyr383Cys 
 De novo 
  
 Multiplex 
 GEN1307R002 
 splice_site_variant 
 c.3+1G>A 
  
 Familial 
 Paternal 
 Multiplex 
 GEN1307R003 
 copy_number_gain 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN1307R004 
 missense_variant 
 c.409C>T 
 p.Leu137Phe 
 De novo 
  
  
 GEN1307R005 
 missense_variant 
 c.365C>T 
 p.Thr122Ile 
 De novo 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
8
Duplication
 1
 
8
Deletion-Duplication
 15
 
8
Duplication
 1
 

No Animal Model Data Available

 

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