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Relevance to Autism

De novo variants in the PRPF8 gene have been identified in ASD probands, including a de novo splice-site variant in a proband from a simplex family and several de novo missense variants (Iossifov et al., 2014; Krumm et al., 2015; Sanders et al., 2015; Yuen et al., 2017; Takata et al., 2018; da Silva Montenegro et al., 2020). Meta-analysis of 13,754 previously published NDD probands and 2,299 controls in da Silva Montenegro et al., 2020 identified six additional patients with validated de novo variants in PRPF8, and a comparison of de novo variants with a previously established mutational rate model found that PRPF8 showed nominal significance before multiple test correction (P = 0.039, P-value adjusted = 0.079, binomial test). O'Grady et al., 2022 reported 12 individuals with heterozygous variants in PRPF8 presenting with a neurodevelopmental syndrome characterized by some degree of intellectual disability or developmental delay, hypotonia, structural cardiac abnormalities, feeding difficulties, behavioral issues, abnormal brain MRI, and dysmorphic features; a diagnosis of ASD was made in approximately half of the individuals in this study.

Molecular Function

Pre-mRNA splicing occurs in 2 sequential transesterification steps. The protein encoded by this gene is a component of both U2- and U12-dependent spliceosomes, and found to be essential for the catalytic step II in pre-mRNA splicing process. It contains several WD repeats, which function in protein-protein interactions. This protein has a sequence similarity to yeast Prp8 protein. This gene is a candidate gene for autosomal dominant retinitis pigmentosa (retinitis pigmentosa 13; OMIM 600059).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder.
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
Excess of rare, inherited truncating mutations in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Meta-Analyses Support Previous and Novel Autism Candidate Genes: Outcomes of an Unexplored Brazilian Cohort.
ASD
Recent Recommendation
Heterozygous variants in PRPF8 are associated with neurodevelopmental disorders
DD, ID
ASD, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1337R001 
 missense_variant 
 c.1003C>T 
 p.Pro335Ser 
 De novo 
  
 Simplex 
 GEN1337R002 
 intron_variant 
 c.4785+22A>G 
  
 De novo 
  
 Simplex 
 GEN1337R003 
 intron_variant 
 c.101-43del 
  
 De novo 
  
  
 GEN1337R004 
 splice_site_variant 
 c.1984+1G>C 
  
 De novo 
  
 Simplex 
 GEN1337R005 
 missense_variant 
 c.1897G>A 
 p.Gly633Ser 
 De novo 
  
 Multiplex 
 GEN1337R006 
 intron_variant 
 c.5138+280C>T 
  
 De novo 
  
 Simplex 
 GEN1337R007 
 missense_variant 
 c.5230C>T 
 p.Arg1744Cys 
 De novo 
  
 Simplex 
 GEN1337R008 
 missense_variant 
 c.4712T>G 
 p.Ile1571Ser 
 De novo 
  
 Simplex 
 GEN1337R009 
 missense_variant 
 c.4733G>A 
 p.Arg1578Gln 
 Familial 
 Maternal 
  
 GEN1337R010 
 missense_variant 
 c.5353G>A 
 p.Val1785Ile 
 De novo 
  
 Simplex 
 GEN1337R011 
 missense_variant 
 c.4204C>T 
 p.Arg1402Cys 
 De novo 
  
 Simplex 
 GEN1337R012 
 missense_variant 
 c.4381G>C 
 p.Asp1461His 
 De novo 
  
 Simplex 
 GEN1337R013 
 missense_variant 
 c.883G>A 
 p.Glu295Lys 
 De novo 
  
 Simplex 
 GEN1337R014 
 missense_variant 
 c.6698G>C 
 p.Ser2233Thr 
 De novo 
  
 Simplex 
 GEN1337R015 
 missense_variant 
 c.644A>G 
 p.Asp215Gly 
 Unknown 
 Not maternal 
  
 GEN1337R016 
 missense_variant 
 c.3890C>A 
 p.Thr1297Lys 
 De novo 
  
 Simplex 
 GEN1337R017 
 missense_variant 
 c.5353G>A 
 p.Val1785Ile 
 De novo 
  
 Simplex 
 GEN1337R018 
 missense_variant 
 c.5594G>C 
 p.Arg1865Thr 
 De novo 
  
  
 GEN1337R019 
 frameshift_variant 
 c.6379dup 
 p.Tyr2127LeufsTer10 
 De novo 
  
 Simplex 
 GEN1337R020 
 missense_variant 
 c.3017C>T 
 p.Ala1006Val 
 De novo 
  
  
 GEN1337R021 
 missense_variant 
 c.5552C>T 
 p.Ser1851Phe 
 De novo 
  
  
 GEN1337R022 
 missense_variant 
 c.2966A>G 
 p.Asp989Gly 
 De novo 
  
  
 GEN1337R023 
 missense_variant 
 c.5633A>G 
 p.Asp1878Gly 
 De novo 
  
  
 GEN1337R024 
 missense_variant 
 c.40G>A 
 p.Val14Met 
 De novo 
  
  
 GEN1337R025 
 stop_gained 
 c.6010C>T 
 p.Gln2004Ter 
 Familial 
 Maternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Deletion-Duplication
 51
 
17
Duplication
 3
 
17
Deletion-Duplication
 5
 
17
Duplication
 9
 
17
Duplication
 1
 

No Animal Model Data Available

 

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