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Relevance to Autism

Li et al., 2023 reported six unrelated individuals with de novo heterozygous PRPF19 variants, four of whom had a formal diagnosis of autism; subsequent functional analysis of two PRPF19 missense variants identified in individuals with autism (p.Gly404Ser and p.Leu499Phe) in Drosophila rescue assays demonstrated that both variants led to social behavior deficits in flies. Additional de novo coding variants in this gene, including two de novo missense variants, had previously been identiifed in ASD probands (Lim et al., 2017; Zhou et al., 2022).

Molecular Function

Enables identical protein binding activity and ubiquitin-ubiquitin ligase activity. Involved in several processes, including DNA damage checkpoint signaling; cellular protein metabolic process; and mRNA splicing, via spliceosome. Acts upstream of or within protein polyubiquitination. Located in cytoplasm; nuclear speck; and site of double-strand break. Part of Prp19 complex and U2-type catalytic step 2 spliceosome. Colocalizes with DNA replication factor A complex.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
ASD, DD
ID
Support
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1421R001 
 missense_variant 
 c.1210G>A 
 p.Gly404Ser 
 De novo 
  
 Simplex 
  et al.  
 GEN1421R002 
 missense_variant 
 c.1495C>T 
 p.Leu499Phe 
 De novo 
  
 Simplex 
  et al.  
 GEN1421R003 
 copy_number_gain 
  
  
 De novo 
  
 Simplex 
  et al.  
 GEN1421R004 
 missense_variant 
 c.1264C>T 
 p.Arg422Cys 
 De novo 
  
 Simplex 
  et al.  
 GEN1421R005 
 missense_variant 
 c.383G>A 
 p.Arg128Gln 
 De novo 
  
 Simplex 
  et al.  
 GEN1421R006 
 frameshift_variant 
 c.816del 
 p.His273ThrfsTer37 
 De novo 
  
 Simplex 
  et al.  
 GEN1421R007 
 missense_variant 
 c.859A>C 
 p.Thr287Pro 
 De novo 
  
  
 GEN1421R008 
 missense_variant 
 c.52T>C 
 p.Ser18Pro 
 De novo 
  
  
 GEN1421R009 
 synonymous_variant 
 c.567G>A 
 p.Lys189= 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
11
Duplication
 5
 
11
Deletion-Duplication
 7
 

No Animal Model Data Available

 

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