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Relevance to Autism

In a genome-wide study, association was found between CNVs in the PRKN gene and autism in AGRE and ACC cohorts (European ancestry) (Glessner et al., 2009). In addition, a rare duplication in the PRKN gene has been identified in an individual with ASD (ORoak et al., 2012). As well, rare variants in the PRKN gene have been identified in individuals with autosomal recessive juvenile parkinsonism (Kitada et al., 1998).

Molecular Function

The precise function of this gene is unknown; however, the encoded protein is a component of a multiprotein E3 ubiquitin ligase complex that mediates the targeting of substrate proteins for proteasomal degradation. Mutations in this gene are known to cause Parkinson disease and autosomal recessive juvenile Parkinson disease.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Autism genome-wide copy number variation reveals ubiquitin and neuronal genes.
ASD
Positive Association
Genome-wide Burden of Rare Short Deletions Is Enriched in Major Depressive Disorder in Four Cohorts.
MDD
Negative Association
ASD, schizophrenia
Support
Genome-wide analysis of rare copy number variations reveals PARK2 as a candidate gene for attention-deficit/hyperactivity disorder.
ADHD
Support
Genotype-Phenotype Correlations for Putative Haploinsufficient Genes in Deletions of 6q26-q27: Report of Eight Patients and Review of Literature
DD
Support
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
ASD
Support
Definition of a putative pathological region in PARK2 associated with autism spectrum disorder through insilico analysis of its functional structure.
ASD
Support
Genome-wide analysis of copy number variations identifies PARK2 as a candidate gene for autism spectrum disorder.
ASD
Support
Prospective diagnostic analysis of copy number variants using SNP microarrays in individuals with autism spectrum disorders.
ASD
ID
Support
ASD
Support
Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
ASD
Support
Prkn knockout mice show autistic-like behaviors and aberrant synapse formation
ASD
Highly Cited
Mutations in the parkin gene cause autosomal recessive juvenile parkinsonism.
ARJP
Highly Cited
An unfolded putative transmembrane polypeptide, which can lead to endoplasmic reticulum stress, is a substrate of Parkin.
Highly Cited
Ubiquitination of a new form of alpha-synuclein by parkin from human brain: implications for Parkinson's disease.
Highly Cited
Familial Parkinson disease gene product, parkin, is a ubiquitin-protein ligase.
Recent Recommendation
Identification of a novel Zn2+binding domain in the autosomal recessive juvenile Parkinson-related E3 ligase parkin.
Recent Recommendation
Bacterial artificial chromosome transgenic mice expressing a truncated mutant parkin exhibit age-dependent hypokinetic motor deficits, dopaminergic...

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN188R001a 
 copy_number_loss 
  
  
 Familial 
 Both parents 
 Simplex 
 GEN188R002a 
 copy_number_loss 
  
  
 Unknown 
  
 Multiplex 
 GEN188R003 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R004 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Unknown 
 GEN188R005 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN188R006 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R007 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R008 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R009 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R010 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN188R011 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN188R012 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN188R013 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R014 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN188R015 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R016 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R017 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN188R018 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN188R019 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN188R020 
 copy_number_gain 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN188R021 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R022 
 copy_number_gain 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN188R023 
 copy_number_gain 
  
  
 De novo 
  
 Simplex 
 GEN188R024 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R025 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN188R026 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R027 
 copy_number_gain 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN188R028 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN188R029 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN188R030 
 copy_number_gain 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN188R031 
 copy_number_loss 
  
  
 Unknown 
  
 Simplex 
 GEN188R032 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R033 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R034 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R035 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R036 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R037 
 copy_number_gain 
  
  
 Unknown 
 Not maternal 
 Simplex 
 GEN188R038 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN188R039 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN188R040 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN188R041 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN188R042 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multi-generational 
 GEN188R043a 
 copy_number_loss 
  
  
 Familial 
 Both parents 
  
 GEN188R044 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN188R045 
 synonymous_variant 
 c.882C>T 
 p.Pro294%3D 
 De novo 
  
 Simplex 
 GEN188R046 
 missense_variant 
 c.850G>C 
 p.Gly284Arg 
 Unknown 
  
 Unknown 
  et al.  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN188C001 
 copy_number_loss 
  
  
  
 AGRE, ACC 
 Discovery 
 GEN188C002 
 copy_number_variation 
  
  
  
 Germany 
 Discovery 
 GEN188C003 
 copy_number_variation 
  
  
  
 Germany 
 Replication 
 GEN188C004 
 copy_number_loss 
  
  
  
 5,780 MDD cases and 6,626 controls from four cohorts 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
6
Duplication
 1
 
6
Duplication
 1
 
6
Deletion
 3
 
6
Deletion
 2
 
6
Deletion-Duplication
 2
 
6
Deletion-Duplication
 48
 
6
Deletion
 9
 

Model Summary

Parkin knockouts show altered dopaminergic signaling, and decreased methamphetamine-induced hyperactivity.

References

Type
Title
Author, Year
Primary
Characterization of Dopaminergic System in the Striatum of Young Adult Park2-/- Knockout Rats.

R_PRKN_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Zinc finger nuclease-directed 5-base pair deletion in exon 4 that results in a frameshift mutation.
Allele Type: Knockout
Strain of Origin:
Genetic Background: Long Evans
ES Cell Line:
Mutant ES Cell Line:
Model Source: SAGE Labs

R_PRKN_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Hyperactivity1
Decreased
Description: Locomotor response in response to 2 mg/kg methamphetamine was significantly lower in Parkin knockouts compared to controls.
Exp Paradigm: Injected intraperitoneally with 2 mg/kg methamphetamine, and activity measured for 100 min.
 Open field test
 2 months
Cytoskeletal organization: neuronal1
Abnormal
Description: Similar levels of alpha-tubulin and beta-actin were found in cell lysates and whole synaptosomal fractions, however, beta-actin immunoreactivity was higher in the membrane-endosomal fraction and lower in the cytosol-vesicular fraction. Similar trends were seen for alpha-tubulin, but the changes did not reach statistical significance.
Exp Paradigm: Synaptosomal fractionation followed by Western blot with beta-actin and alpha-tubulin antibodies
 Western blot
 2 months
Synaptic neuroreceptors1
Decreased
Description: TAAR-1 localizes intracellularly in presynaptic and postsynaptic neuronal elements. The immunoreactivity of the 56-kDa band was unchanged in the cerebellum of Parkin knockout rats compared to wildtype rats.
 Western blot
 2 months
Neuroreceptor levels: da1
Decreased
Description: Compared to the wildtype controls, the levels of D2L receptor were significantly decreased in striatal lysates from the Parkin knockout rats. Total levels of D2 receptor (S + L) were unchanged.
 Western blot
 2 months
Neurotransmitter release1
Increased
Description: The levels of beta-PEA, a trace amine neuromodulator, were significantly higher in the striatum from the Parkin knockout rats compared to the wildtype rats.
 Liquid chromatography-mass spectrometry (lc-ms)
 2 months
Stereotypy1
Decreased
Description: Small stereotypic movements including grooming measured within 30 min time frame were significantly decreased in Parkin knockout rats compared to controls.
 Open field test
 2 months
Size/growth1
Increased
Description: Parkin knockout rats display higher body weight between the ages of 1 and 2 months.
 Body weight measurement
 4-9 weeks
Protein binding1
Decreased
Description: The 70 kDa band may be a complex of TDP-43 with one of its interacting protein partners. The 70 kDa band was of lower density in the Parkin knockout rats compared to the controls.
 Western blot
 2 months
Gene expression1
Increased
Description: Drd2 mRNA was significantly increased in Parkin knockout rats compared to wildtype.
Exp Paradigm: Quantitaive PCR using Chrna7 as control.
 Quantitative pcr (qrt-pcr)
 2 months
Enzyme activity1
Decreased
Description: Monoamine oxidase A (metabolizing dopamine) and monoamine oxidase B (metabolizing beta-PEA) show significantly reduced activity in Parkin knockout striata, with no difference in protein levels of these enzymes.
 Enzyme assay
 2 months
Targeted expression1
Decreased
Description: Complete loss of parkin protein in the homozygous knockout rat.
 Western blot
 2 months
Gene expression1
 No change
 Quantitative pcr (qrt-pcr)
 2 months
Protein expression level evidence1
 No change
 Western blot
 2 months
Protein ubiquitination1
 No change
 Western blot
 2 months
General locomotor activity: ambulatory activity1
 No change
 Open field test
 2 months
Neurotransporter expression1
 No change
 Western blot
 2 months
Synaptic neuroreceptors1
 No change
 Western blot
 2 months
Neurotransmitter metabolism1
 No change
 Western blot
 2 months
Neurotransmitter release1
 No change
 Liquid chromatography-mass spectrometry (lc-ms)
 2 months
Neurotransmitter release: catecholamines: dopamine1
 No change
 High-performance liquid chromatography (hplc)
 2 months
Neurotransmitter release: serotonin1
 No change
 High-performance liquid chromatography (hplc)
 2 months
Core body temperature1
 No change
 Body temperature measurement
 2 months
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Physiological parameters, Seizure, Sensory, Social behavior

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