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Relevance to Autism

SCID mice, which are homozygous for the severe combined immune deficiency (SCID) spontaneous mutation Prkdcscid, were shown to exhibit social deficits and hyper-connectivity between mutiple brain regions that could be rescued by repopulation of the adaptive immune system (Filiano et al., 2016). Three novel de novo predicted damaging missense variants in PRKDC were observed in ASD probands from the Simons Simplex Collection (Iossifov et al., 2014). A SCID patient with compound heterozygous variants in PRKDC was also found to exhibit dysmorphic features, severe growth failure, microcephaly, seizures, and developmental delay (Woodbine et al., 2013). Two non-synonymous postzygotic mosaic mutations (PZMs) in the PRKDC gene were identified in ASD probands (one previously identified variant from Iossifov et al., 2014, and a novel variant in Lim et al., 2017); comparison with a background set of 84,448 privately inherited variants demonstrated that this gene harbored more PZMs than expected genome-wide based on background rates (2/571 observed vs. 30/84,448 expected; hypergeometric P-value 0.018).

Molecular Function

This gene encodes the catalytic subunit of the DNA-dependent protein kinase (DNA-PK) and functions with the Ku70/Ku80 heterodimer protein in DNA double strand break repair and recombination. Homozygous or compound heterozygous mutations in the PRKDC gene are responsible for immunodeficiency 26, with or without neurologic abnormalities (IMD26; OMIM 615966)

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Unexpected role of interferon- in regulating neuronal connectivity and social behaviour.
Support
Whole genome sequencing and variant discovery in the ASPIRE autism spectrum disorder cohort.
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Recent Recommendation
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Recent Recommendation
PRKDC mutations in a SCID patient with profound neurological abnormalities.
Immunodeficiency 26, with or without neurologic ab
DD, epilepsy, microcephaly

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN839R001 
 missense_variant 
 c.1115C>T 
 p.Pro372Leu 
 De novo 
  
 Simplex 
 GEN839R002 
 missense_variant 
 c.2561G>T 
 p.Arg854Ile 
 De novo 
  
 Simplex 
 GEN839R003 
 missense_variant 
 c.1078T>C 
 p.Ser360Pro 
 De novo 
  
 Simplex 
 GEN839R004a 
 missense_variant 
 c.10721C>T 
 p.Ala3574Val 
 Familial 
 Maternal;unknown 
 Simplex 
 GEN839R004b 
 intron_variant 
 c.1777-710dup 
  
 Unknown 
  
 Simplex 
 GEN839R005 
 missense_variant 
 c.10414T>C 
 p.Ile3472Thr 
 De novo 
  
 Simplex 
 GEN839R006 
 splice_site_variant 
 c.3364+1G>T 
  
 Unknown 
  
 Simplex 
 GEN839R007 
 synonymous_variant 
 c.396T>A 
 p.Ile132= 
 De novo 
  
  
 GEN839R008 
 missense_variant 
 c.4427A>G 
 p.His1476Arg 
 Unknown 
  
  
 GEN839R009 
 synonymous_variant 
 c.11841C>T 
 p.Ser3947%3D 
 De novo 
  
 Simplex 
 GEN839R010 
 missense_variant 
 c.8636G>C 
 p.Cys2879Ser 
 De novo 
  
 Simplex 
 GEN839R011 
 synonymous_variant 
 c.7056G>A 
 p.Gln2352%3D 
 De novo 
  
 Simplex 
 GEN839R012 
 missense_variant 
 c.1204A>G 
 p.Thr402Ala 
 De novo 
  
 Simplex 
 GEN839R013 
 missense_variant 
 c.1156G>A 
 p.Val386Ile 
 De novo 
  
 Simplex 
 GEN839R014 
 synonymous_variant 
 c.10530C>T 
 p.Ala3510%3D 
 De novo 
  
  
 GEN839R015 
 splice_region_variant 
 c.778-3T>C 
  
 De novo 
  
  
 GEN839R016 
 missense_variant 
 c.8729G>A 
 p.Arg2910His 
 De novo 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
8
Duplication
 1
 
8
Duplication
 1
 
8
Duplication
 1
 
8
Duplication
 2
 
8
Duplication
 2
 
8
Duplication
 1
 
8
Duplication
 1
 
8
Duplication
 1
 
8
Duplication
 1
 
8
Duplication
 1
 
8
Duplication
 1
 
8
Duplication
 3
 
8
Duplication
 9
 

Model Summary

Prkdc null mice display severe combined immunodeficiency (SCID) and have no functional B or T cells as the DNA repair and non homologous end joining (NHEJ) function of the PRKDC protein is needed for reaarangement of genes that encode antigen- specific immune receptors.

References

Type
Title
Author, Year
Primary
Unexpected role of interferon- in regulating neuronal connectivity and social behaviour.

M_PRKDC_1_SP_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Prkdc-scid mice are homozygous for the spontaneous mutation involving a T-to-A transversion point mutation in codon 4095 that creates a premature stop codon and lack adaptive immune cells. Scid leakiness is high in C57Bl/6 background as more than 1 microgram / ml of immunoglobulin levels are detectable.
Allele Type: Spontaneous
Strain of Origin: CB-17 BALB/C-Igh
Genetic Background: C57Bl/6
ES Cell Line:
Mutant ES Cell Line:
Model Source: JAX

M_PRKDC_1_SP_HM_LYMPHOCYTES

Model Type: RESCUE-Transplantation
Model Genotype: Homozygous
Mutation: Four week old Prkdc scid mice were repopulated with wild type lymphocytes from the spleen and lymph nodes (axillary, brachial, cervical, inguinal and lumbar). Lymphocytes were injected i.v. at 5 X 10 ^6 cells in 250 microliter of saline into the tail vein.
Allele Type: Spontaneous
Strain of Origin: CB-17 BALB/C-Igh
Genetic Background: C57Bl/6
ES Cell Line:
Mutant ES Cell Line:
Model Source: JAX

M_PRKDC_1_SP_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Neuronal activation following behavioral stimulation: c-fos levels1
Increased
Description: C-fos positive cells are increased in the prefrontal and orbital cortices, indicating hyper-responsiveness, in prkdc scid mice exposed to a social stimulus, compared to wt controls
Exp Paradigm: NA
 Immunohistochemistry
 8-10 weeks
Functional magnetic resonance imaging: connectivity1
Increased
Description: Prkdc scid mice have hyperconnectivity between prelimbic cortex and frontal cortex, frontal association area and orbital cortex, insula and orbital cortex, insula and prelimbic cortex
Exp Paradigm: NA
 Functional magnetic resonance imaging (fmri)-resting state
 8-10 weeks
Social interaction: opposite sex1
Decreased
Description: Male prkdc scid mice have decreased interaction time with females of the same genotype compared to wt control pairs
Exp Paradigm: NA
 Reciprocal social interaction test
 8-10 weeks
Social approach1
Decreased
Description: Prkdc scid mice have no preference for stimulus mouse over object in the three chamber social approach test unlike wt controls
Exp Paradigm: NA
 Three-chamber social approach test
 8-10 weeks
Anxiety1
 No change
 Elevated plus maze test
 8-10 weeks
Anxiety1
 No change
 Open field test
 8-10 weeks
General locomotor activity1
 No change
 Open field test
 8-10 weeks
Motor coordination and balance1
 No change
 Accelerating rotarod test
 8-10 weeks
Functional magnetic resonance imaging: connectivity1
 No change
 Functional magnetic resonance imaging (fmri)-resting state
 8-10 weeks
Olfaction1
 No change
 Urine preference test
 8-10 weeks
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Immune response, Learning & memory, Maternal behavior, Molecular profile, Neuroanatomy / ultrastructure / cytoarchitecture, Physiological parameters, Repetitive behavior, Seizure

M_PRKDC_1_SP_HM_LYMPHOCYTES

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Functional magnetic resonance imaging: connectivity1
Restored
Description: Introduction of wt lymphocytes normalizes connectivity between prelimbic cortex and frontal cortex, frontal association area and orbital cortex, insula and orbital cortex, insula and prelimbic cortex in prkdc scid mice
Exp Paradigm: NA
 Functional magnetic resonance imaging (fmri)-resting state
 8-10 weeks
Social approach1
Restored
Description: Introduction of wt lymphocytes restores preference for stimulus mouse over object in prkdc scid mice
Exp Paradigm: NA
 Three-chamber social approach test
 8-10 weeks
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Physiological parameters, Repetitive behavior, Seizure, Sensory

 

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