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Relevance to Autism

A de novo nonsense variant in the PRKAR1B gene was identified in an ASD proband from the Autism Sequencing Consortium in De Rubeis et al., 2014, while de novo missense variants in this gene have been identified in ASD probands from the Simons Simplex Collection (Iossifov et al., 2014) and the iHART cohort (Ruzzo et al., 2019). Two separate studies used TADA analysis to identify PRKAR1B as an ASD candidate gene with a q-value < 0.1 (Du et al., 2019; Ruzzo et al., 2019). Marbach et al., 2021 characterized six individuals with PRKAR1B missense variants (five of which were confirmed de novo), all of whom were diagnosed with autism spectrum disorder and presented with global developmental delay, speech delay and/or regression, and dyspraxia/apraxia; functional analysis of PRKAR1B missense variants identified in this cohort demonstrated significantly reduced basal activity in cells transfected with mutant PRKAR1B compared to wild-type protein.

Molecular Function

The protein encoded by this gene is a regulatory subunit of cyclic AMP-dependent protein kinase A (PKA), which is involved in the signaling pathway of the second messenger cAMP. Two regulatory and two catalytic subunits form the PKA holoenzyme, disbands after cAMP binding. The holoenzyme is involved in many cellular events, including ion transport, metabolism, and transcription.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Phenotypic characterization of seven individuals with Marbach-Schaaf neurodevelopmental syndrome
Marbach-Schaaf neurodevelopmental syndrome, DD
ASD or autistic features, ADHD, ID
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Recent Recommendation
Variants in PRKAR1B cause a neurodevelopmental disorder with autism spectrum disorder, apraxia, and insensitivity to pain
ASD, DD
ADHD
Recent Recommendation
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Recent Recommendation
Nonrandom occurrence of multiple de novo coding variants in a proband indicates the existence of an oligogenic model in autism.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1102R001 
 stop_gained 
 c.289C>T 
 p.Arg97Ter 
 De novo 
  
  
 GEN1102R002 
 missense_variant 
 c.727C>T 
 p.Arg243Cys 
 De novo 
  
 Simplex 
 GEN1102R003 
 missense_variant 
 c.529G>C 
 p.Val177Leu 
 De novo 
  
 Simplex 
 GEN1102R004 
 missense_variant 
 c.727C>T 
 p.Arg243Cys 
 De novo 
  
 Multiplex 
 GEN1102R005 
 missense_variant 
 c.586G>A 
 p.Glu196Lys 
 De novo 
  
 Simplex 
 GEN1102R006 
 missense_variant 
 c.500_501inv 
 p.Gln167Leu 
 Unknown 
  
 Unknown 
 GEN1102R007 
 missense_variant 
 c.1003C>T 
 p.Arg335Trp 
 De novo 
  
 Simplex 
 GEN1102R008 
 missense_variant 
 c.1003C>T 
 p.Arg335Trp 
 De novo 
  
 Simplex 
 GEN1102R009 
 missense_variant 
 c.1003C>T 
 p.Arg335Trp 
 De novo 
  
 Simplex 
 GEN1102R010 
 missense_variant 
 c.1003C>T 
 p.Arg335Trp 
 De novo 
  
 Simplex 
 GEN1102R011 
 missense_variant 
 c.1003C>T 
 p.Arg335Trp 
 De novo 
  
  
 GEN1102R012 
 missense_variant 
 c.1003C>T 
 p.Arg335Trp 
 De novo 
  
  
 GEN1102R013 
 missense_variant 
 c.1003C>T 
 p.Arg335Trp 
 Unknown 
 Not maternal 
  
 GEN1102R014 
 missense_variant 
 c.1003C>T 
 p.Arg335Trp 
 De novo 
  
  
 GEN1102R015 
 missense_variant 
 c.1003C>T 
 p.Arg335Trp 
 De novo 
  
  
 GEN1102R016 
 missense_variant 
 c.1003C>T 
 p.Arg335Trp 
 De novo 
  
  
 GEN1102R017 
 missense_variant 
 c.1003C>T 
 p.Arg335Trp 
 De novo 
  
  
 GEN1102R018 
 missense_variant 
 c.697C>T 
 p.Arg233Cys 
 De novo 
  
 Simplex 
 GEN1102R019 
 missense_variant 
 c.1028G>A 
 p.Gly343Glu 
 De novo 
  
  
 GEN1102R020 
 missense_variant 
 c.638C>T 
 p.Ala213Val 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
7
Deletion-Duplication
 19
 
7
Duplication
 1
 
7
Duplication
 1
 
7
Duplication
 1
 
7
Duplication
 2
 
7
Deletion-Duplication
 1
 
7
Deletion
 5
 
7
Deletion
 2
 

No Animal Model Data Available

 

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