HELP     Sign In
Search

Relevance to Autism

Verbinnen et al., 2025 described a cohort of 26 individuals with predominantly de novo missense variants in the PPP2R5C gene who presented with a neurodevelopmental disorder within the Houge-Janssens syndrome spectrum characterized by neurodevelopmental delay and hypotonia with a high risk of epilepsy, behavioral problems, macrocephaly, and mildly dysmorphic facial features; 5 individuals in this cohort were reported to have been diagnosed with autism spectrum disorder. Additional biochemical assessment of PPP2R5C variants reported in Verbinnen et al., 2025 demonstrated defects in subunit binding, substrate binding, and/or phosphatase catalytic activity. Muir et al., 2024 had previously reported a recurrent missense variant in PPP2R5C (NM_001161725.2:c.457G>A;p.Glu153Lys) in five unrelated individuals with overlapping clinical features of macrocephaly, intellectual disability, and seizures; detailed clinical summaries of two of the five individuals with this recurrent missense variant reported one individual with autism spectrum disorder. De novo missense variants in PPP2R5C that were predicted to be damaging (CADD > 25) were also reported in an ASD proband from the SAGE cohort (Guo et al., 2019) and in a male ASD proband from the SPARK cohort (Feliciano et al., 2019). Association analysis of ASD families from the Autism Genome Project (AGP) Consortium in Anney et al., 2010 identified an intronic SNP in the PPP2R5C gene (rs7142002) as fulfilling the threshold for association with ASD (P < 5.0E-06).

Molecular Function

The product of this gene belongs to the phosphatase 2A regulatory subunit B family. Protein phosphatase 2A is one of the four major Ser/Thr phosphatases, and it is implicated in the negative control of cell growth and division. It consists of a common heteromeric core enzyme, which is composed of a catalytic subunit and a constant regulatory subunit, that associates with a variety of regulatory subunits. The B regulatory subunit might modulate substrate selectivity and catalytic activity. This gene encodes a gamma isoform of the regulatory subunit B56 subfamily.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Pathogenic de novo variants in PPP2R5C cause a neurodevelopmental disorder within the Houge-Janssens syndrome spectrum
DD, ID
ASD, ADHD, epilepsy/seizures
Positive association
A genome-wide scan for common alleles affecting risk for autism.
ASD
Support
A recurrent variant in PPP2R5C identified in individuals with macrocephaly, intellectual disability, and seizures
ID, epilepsy/seizures
ASD, DD
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1489R001 
 missense_variant 
 c.310T>C 
 p.Cys104Arg 
 De novo 
  
  
 GEN1489R002 
 inframe_deletion 
 c.326_331del 
 p.Asp109_Phe110del 
 De novo 
  
  
 GEN1489R003 
 missense_variant 
 c.330T>A 
 p.Phe110Leu 
 De novo 
  
  
 GEN1489R004 
 missense_variant 
 c.524C>G 
 p.Pro175Arg 
 De novo 
  
  
 GEN1489R005 
 missense_variant 
 c.529G>A 
 p.Glu177Lys 
 De novo 
  
  
 GEN1489R006 
 missense_variant 
 c.529G>A 
 p.Glu177Lys 
 De novo 
  
  
 GEN1489R007 
 missense_variant 
 c.529G>A 
 p.Glu177Lys 
 De novo 
  
  
 GEN1489R008 
 missense_variant 
 c.529G>A 
 p.Glu177Lys 
 De novo 
  
  
 GEN1489R009 
 missense_variant 
 c.535G>A 
 p.Glu179Lys 
 De novo 
  
  
 GEN1489R010 
 inframe_deletion 
 c.540_542del 
 p.Thr181del 
 De novo 
  
  
 GEN1489R011 
 inframe_deletion 
 c.552_554del 
 p.Ala185del 
 De novo 
  
  
 GEN1489R012 
 inframe_deletion 
 c.552_554del 
 p.Ala185del 
 De novo 
  
  
 GEN1489R013 
 missense_variant 
 c.556T>C 
 p.Trp186Arg 
 De novo 
  
  
 GEN1489R014 
 missense_variant 
 c.556T>C 
 p.Trp186Arg 
 Unknown 
  
  
 GEN1489R015 
 missense_variant 
 c.563A>G 
 p.His188Arg 
 De novo 
  
  
 GEN1489R016 
 missense_variant 
 c.563A>G 
 p.His188Arg 
 De novo 
  
  
 GEN1489R017 
 missense_variant 
 c.563A>C 
 p.His188Pro 
 De novo 
  
  
 GEN1489R018 
 missense_variant 
 c.563A>C 
 p.His188Pro 
 De novo 
  
  
 GEN1489R019 
 missense_variant 
 c.563A>T 
 p.His188Leu 
 De novo 
  
  
 GEN1489R020 
 missense_variant 
 c.566T>C 
 p.Leu189Pro 
 De novo 
  
  
 GEN1489R021 
 missense_variant 
 c.685G>A 
 p.Glu229Lys 
 De novo 
  
  
 GEN1489R022 
 missense_variant 
 c.689A>T 
 p.Asp230Val 
 De novo 
  
  
 GEN1489R023 
 missense_variant 
 c.694C>T 
 p.Arg232Trp 
 De novo 
  
  
 GEN1489R024 
 missense_variant 
 c.695G>T 
 p.Arg232Leu 
 Unknown 
  
  
 GEN1489R025 
 missense_variant 
 c.895A>G 
 p.Lys299Glu 
 De novo 
  
  
 GEN1489R026 
 missense_variant 
 c.1080A>C 
 p.Leu360Phe 
 Unknown 
  
  
 GEN1489R027 
 missense_variant 
 c.1195G>A 
 p.Glu399Lys 
 De novo 
  
  
 GEN1489R028 
 missense_variant 
 c.457G>A 
 p.Glu153Lys 
 De novo 
  
 Simplex 
 GEN1489R029 
 missense_variant 
 c.457G>A 
 p.Glu153Lys 
 Unknown 
  
  
 GEN1489R030 
 missense_variant 
 c.848C>T 
 p.Leu283Ser 
 De novo 
  
 Simplex 
 GEN1489R031 
 missense_variant 
 c.416G>A 
 p.Arg139Gln 
 De novo 
  
 Simplex 

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN1489C001 
 intron_variant 
 rs7142002 
 c.964-99T>C 
  
 "1217 families from the Autism Genome Project (AGP) Consortium with 1230 ASD probands of European ancestry classified as ""spectrum""" 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
14
Duplication
 2
 
14
Duplication
 1
 
14
Duplication
 2
 
14
Duplication
 1
 
14
Duplication
 1
 
14
Deletion
 6
 
14
Deletion
 1
 
14
Deletion
 5
 
14
Deletion-Duplication
 11
 
14
Duplication
 2
 

No Animal Model Data Available

 

No Interactions Available
HELP
Copyright © 2017 MindSpec, Inc.