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Relevance to Autism

Reynhout et al., 2018 reported 16 individuals with de novo variants in the PPP2CA gene who presented with syndromic developmental delay/intellectual disability; five of these individuals presented with ASD or PDD-NOS, while two other individuals presented with stereotypic behavior or movements.

Molecular Function

This gene encodes the phosphatase 2A catalytic subunit. Protein phosphatase 2A is one of the four major Ser/Thr phosphatases, and it is implicated in the negative control of cell growth and division. It consists of a common heteromeric core enzyme, which is composed of a catalytic subunit and a constant regulatory subunit, that associates with a variety of regulatory subunits. This gene encodes an alpha isoform of the catalytic subunit.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
De Novo Mutations Affecting the Catalytic C Subunit of PP2A, PPP2CA, Cause Syndromic Intellectual Disability Resembling Other PP2A-Related Neurode...
DD, ID
ASD, epilepsy/seizures
Support
ASD, DD, ID, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
ASD, DD, ID, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1055R001 
 missense_variant 
 c.572A>G 
 p.His191Arg 
 De novo 
  
 Simplex 
 GEN1055R002 
 frameshift_variant 
 c.882dup 
 p.Arg295Ter 
 De novo 
  
 Simplex 
 GEN1055R003 
 frameshift_variant 
 c.438del 
 p.Phe146LeufsTer29 
 De novo 
  
  
 GEN1055R004 
 inframe_insertion 
 c.923_924insTCT 
 p.Phe308_Leu309insLeu 
 De novo 
  
 Simplex 
 GEN1055R005 
 stop_gained 
 c.640C>T 
 p.Arg214Ter 
 De novo 
  
 Simplex 
 GEN1055R006 
 missense_variant 
 c.572A>G 
 p.His191Arg 
 De novo 
  
  
 GEN1055R007 
 missense_variant 
 c.668A>T 
 p.Asp223Val 
 De novo 
  
 Simplex 
 GEN1055R008 
 stop_gained 
 c.373C>T 
 p.Gln125Ter 
 De novo 
  
 Simplex 
 GEN1055R009 
 missense_variant 
 c.380A>G 
 p.Tyr127Cys 
 De novo 
  
 Simplex 
 GEN1055R010 
 missense_variant 
 c.794A>G 
 p.Tyr265Cys 
 De novo 
  
  
 GEN1055R011 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN1055R012 
 missense_variant 
 c.391G>C 
 p.Asp131His 
 De novo 
  
 Simplex 
 GEN1055R013 
 missense_variant 
 c.366G>C 
 p.Gln122His 
 De novo 
  
 Simplex 
 GEN1055R014 
 missense_variant 
 c.263A>G 
 p.Asp88Gly 
 De novo 
  
 Simplex 
 GEN1055R015 
 missense_variant 
 c.179G>T 
 p.Gly60Val 
 De novo 
  
 Simplex 
 GEN1055R016 
 missense_variant 
 c.667G>C 
 p.Asp223His 
 De novo 
  
  
 GEN1055R017 
 missense_variant 
 c.667G>C 
 p.Asp223His 
 De novo 
  
 Simplex 
 GEN1055R018 
 missense_variant 
 c.617G>T 
 p.Arg206Leu 
 De novo 
  
 Simplex 
 GEN1055R019 
 synonymous_variant 
 c.28C>T 
 p.Leu10%3D 
 De novo 
  
 Multiplex 
 GEN1055R020 
 missense_variant 
 c.586T>C 
 p.Cys196Arg 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
5
Duplication
 1
 
5
Deletion
 1
 
5
Deletion
 2
 
5
Duplication
 1
 
5
Deletion-Duplication
 9
 
5
Deletion
 2
 

No Animal Model Data Available

 

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