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Relevance to Autism

DeNovoWest analysis of an integrated cohort of over 40,000 ASD cases across unpublished and published global cohort in Tan et al., 2026 identified PPP1R10 as an ASD risk gene with a false discovery rate of <0.05; among the ASD-associated variants used in this analysis were seven de novo missense variants identified in probands from the Autism Sequencing Consortium and the SPARK cohort. Additional ASD-associated de novo variants in PPP1R10 that were not included in the Tan et al., 2026 analysis include a de novo loss-of-function variant identified in a Simons Simplex Collection proband in Wilfert et al., 2021 and a de novo missense variant in a MSSNG proband in Zhou et al., 2022.

Molecular Function

This gene encodes a protein phosphatase 1 binding protein. The encoded protein plays a role in many cellular processes including cell cycle progression, DNA repair and apoptosis by regulating the activity of protein phosphatase 1.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Genomic landscape of rare variants in a Chinese autism cohort and discovery of novel risk genes.
ASD
Support
Rare coding variation provides insight into the genetic architecture and phenotypic context of autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Recent ultra-rare inherited variants implicate new autism candidate risk genes
ASD
Support
PNUTS/PP1 regulates RNAPII-mediated gene expression and is necessary for developmental growth.
Support
PNUTS forms a trimeric protein complex with GABA(C) receptors and protein phosphatase 1.
Highly Cited
Isolation and characterization of PNUTS, a putative protein phosphatase 1 nuclear targeting subunit.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1570R001 
 missense_variant 
 c.1340C>T 
 p.Ala447Val 
 De novo 
  
  
 GEN1570R002 
 missense_variant 
 c.1346G>A 
 p.Arg449His 
 De novo 
  
  
 GEN1570R003 
 missense_variant 
 c.1340C>T 
 p.Ala447Val 
 De novo 
  
 Unknown 
 GEN1570R004 
 missense_variant 
 c.2741A>G 
 p.His914Arg 
 De novo 
  
 Simplex 
 GEN1570R005 
 missense_variant 
 c.727C>G 
 p.Leu243Val 
 De novo 
  
 Simplex 
 GEN1570R006 
 missense_variant 
 c.77A>G 
 p.Lys26Arg 
 De novo 
  
 Multiplex 
 GEN1570R007 
 missense_variant 
 c.2474C>T 
 p.Ala825Val 
 De novo 
  
 Unknown 
 GEN1570R008 
 splice_site_variant 
 c.-532-2A>G 
 p.? 
 De novo 
  
 Simplex 
 GEN1570R009 
 synonymous_variant 
 c.1536C>T 
 p.Tyr512= 
 De novo 
  
 Simplex 
 GEN1570R010 
 missense_variant 
 c.1340C>T 
 p.Ala447Val 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
6
Deletion
 1
 

No Animal Model Data Available

 

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