Summary Statistics:
ASD Reports: 10
Recent Reports: 0
Annotated variants: 22
Associated CNVs: 2
Evidence score: 2
Gene Score: S
Relevance to Autism
A homozygous missense variant in the POMGNT1 gene that was predicted to be damaging in silico was identifed in a male ASD proband born to consanguineous parents (Yu et al., 2013). Additional homozygous variants in the POMGNT1 gene had previously been identified in patients with a form of congenital muscular dystrophy-dystroglycanopathy with brain and eye anomalies (type A3; MDDGA3; OMIM 253280), previously designated Walker-Warburg syndrome (WWS) or muscle-eye-brain disease (MEB), who also presented with severe autistic features (Haliloglu et al., 2004; Hehr et al., 2007).
Molecular Function
This gene encodes a type II transmembrane protein that resides in the Golgi apparatus. It participates in O-mannosyl glycosylation and is specific for alpha linked terminal mannose. Mutations in this gene may be associated with muscle-eye-brain disease and several congenital muscular dystrophies.
References
Primary
Using whole-exome sequencing to identify inherited causes of autism.
ASD
Support
Clinical spectrum of muscle-eye-brain disease: from the typical presentation to severe autistic features.
Muscular dystrophy-dystroglycanopathy (congenital
Support
Integrating de novo and inherited variants in 42
ASD
Support
Complex Diagnostics of Non-Specific Intellectual Developmental Disorder
DD, ID
Support
Unravelling the genetic causes of multiple malformation syndromes: A whole exome sequencing study of the Cypriot population
DD, ID
Stereotypy
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD
Support
DD, epilepsy/seizures
Support
Novel POMGnT1 mutations define broader phenotypic spectrum of muscle-eye-brain disease.
Muscular dystrophy-dystroglycanopathy (congenital
GEN528R001a
missense_variant
c.1100G>A
p.Arg367His
Familial
Both parents
Simplex
GEN528R002a
missense_variant
c.1324C>T
p.Arg442Cys
Familial
Both parents
Simplex
GEN528R003a
splice_site_variant
c.1540-2A>G
Familial
Both parents
Simplex
GEN528R004a
frameshift_variant
c.593del
p.Ser198ThrfsTer43
Unknown
Simplex
GEN528R004b
splice_site_variant
c.1539+1G>A
Unknown
Simplex
GEN528R005a
missense_variant
p.Arg442Cys
Familial
Both parents
Multiplex
GEN528R006a
frameshift_variant
c.25dup
p.Leu9ProfsTer20
Unknown
Simplex
GEN528R006b
frameshift_variant
c.593del
p.Ser198ThrfsTer43
Unknown
Simplex
GEN528R007a
frameshift_variant
c.1350_1354del
p.Trp451AlafsTer11
Familial
Both parents
Simplex
GEN528R008a
missense_variant
c.1325G>A
p.Arg442His
Familial
Both parents
Simplex
GEN528R009a
stop_gained
p.Arg580Ter
Unknown
Simplex
GEN528R009b
missense_variant
c.1814G>A
p.Arg605His
Unknown
Simplex
GEN528R010
frameshift_variant
c.1735del
p.Ile579PhefsTer45
Familial
Simplex
GEN528R011
frameshift_variant
c.462dup
p.His155SerfsTer2
Familial
Simplex
GEN528R012
missense_variant
c.1721G>T
p.Cys574Phe
Familial
Simplex
GEN528R013
stop_gained
c.643C>T
p.Arg215Ter
Familial
Paternal
Multiplex
GEN528R014a
stop_gained
c.304G>T
p.Glu102Ter
Familial
Multiplex
GEN528R014b
missense_variant
c.385C>T
p.Arg129Trp
Familial
Multiplex
GEN528R015a
missense_variant
c.385C>T
p.Arg129Trp
Unknown
Unknown
GEN528R016
missense_variant
c.290G>A
p.Arg97Gln
De novo
GEN528R017
frameshift_variant
c.793_796del
p.Arg265GlyfsTer67
Familial
Maternal
Multiplex
GEN528R018a
stop_gained
c.1462C>T
p.Arg488Ter
Familial
Both parents
Unknown
No Common Variants Available
1
Deletion-Duplication
16
No Animal Model Data Available
Summary Statistics:
Total Interactions: 19
Total Publications: 7
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
ACCN4
Acid-sensing ion channel 4
55515
Q96FT7-4
IP; LC-MS/MS
Huttlin EL , et al. 2015
ADAM32
Disintegrin and metalloproteinase domain-containing protein 32
203102
Q8TC27
IP; LC-MS/MS
Huttlin EL , et al. 2015
ATP6V0A2
ATPase, H+ transporting, lysosomal V0 subunit a2
23545
Q9Y487
IP; LC-MS/MS
Huttlin EL , et al. 2015
BRCA1
breast cancer 1, early onset
672
P38398
Y2H
Wang J , et al. 2011
CLEC2D
C-type lectin domain family 2, member D
29121
Q9UHP7
IP; LC-MS/MS
Huttlin EL , et al. 2015
FMR1
fragile X mental retardation 1
2332
G8JLE9
PAR-CLIP
Ascano M Jr , et al. 2012
IL8
interleukin 8
3576
P10145
Y2H
Wang J , et al. 2011
LNX1
ligand of numb-protein X 1, E3 ubiquitin protein ligase
84708
Q8TBB1
Y2H; bimolecular fluorescence complementation assay
Rolland T , et al. 2014
MBD1
methyl-CpG binding domain protein 1
4152
Q9UIS9
Y2H
Sakai Y , et al. 2011
MCOLN3
mucolipin 3
55283
Q8TDD5
IP; LC-MS/MS
Huttlin EL , et al. 2015
MME
membrane metallo-endopeptidase
4311
P08473
IP; LC-MS/MS
Huttlin EL , et al. 2015
RANBP6
RAN binding protein 6
26953
O60518
IP; LC-MS/MS
Huttlin EL , et al. 2015
SOX6
SRY (sex determining region Y)-box 6
55553
P35712
Y2H
Wang J , et al. 2011
TMEM5
Transmembrane protein 5
10329
Q9Y2B1
IP; LC-MS/MS
Huttlin EL , et al. 2015
TMPRSS11B
Transmembrane protease serine 11B
132724
Q86T26
IP; LC-MS/MS
Huttlin EL , et al. 2015
TOP3B
topoisomerase (DNA) III beta
8940
O95985
HITS-CLIP
Xu D , et al. 2013
TOR1AIP2
torsin A interacting protein 2
163590
Q8NFQ8
IP; LC-MS/MS
Huttlin EL , et al. 2015
UBC
ubiquitin C
7316
P63279
LC-MS/MS
Denis NJ , et al. 2007
ZNF238
zinc finger and BTB domain containing 18
10472
Q99592
Y2H
Wang J , et al. 2011