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Relevance to Autism

Rare de novo variants in the POLR3A gene, including a splice-site variant, have been identified in ASD probands from multiple studies (Yuen et al., 2016; Yuen et al., 2017; Turner et al., 2017), while de novo variants in this gene have also been identified in probands presenting with intellectual disability or developmental delay (Lelieveld et al., 2016; Deciphering Developmental Disorder Study 2017). Biallelic variants in the POLR3A gene are responsible for hypomyelinating leukodystrophy-7 (HLD7; OMIM 607694), an autosomal recessive neurodegenerative disorder characterized by childhood onset of progressive motor decline manifest as spasticity, ataxia, tremor, and cerebellar signs, as well as mild cognitive regression (Bernard et al., 2011); a case with POLR3A-associated hypomyelinating leukodystrophy was recently described that also presented with developmental delay, intellectual disability, autism spectrum disorder, and hypodontia (Hiraide et al., 2020).

Molecular Function

The protein encoded by this gene is the catalytic component of RNA polymerase III, which synthesizes small RNAs. The encoded protein also acts as a sensor to detect foreign DNA and trigger an innate immune response.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability
ID
Support
Integrating de novo and inherited variants in 42
ASD
Support
Genetic and phenotypic analysis of 101 patients with developmental delay or intellectual disability using whole-exome sequencing
ASD, DD
Support
Genomic Patterns of De Novo Mutation in Simplex Autism
ASD
Support
Prevalence and architecture of de novo mutations in developmental disorders
DD
Support
Genome-wide characteristics of de novo mutations in autism
ASD
Support
DD, epilepsy/seizures
Highly Cited
Mutations of POLR3A encoding a catalytic subunit of RNA polymerase Pol III cause a recessive hypomyelinating leukodystrophy
Hypomyelinating leukodystrophy-7 (HLD7)
Recent Recommendation
Identification of a deep intronic POLR3A variant causing inclusion of a pseudoexon derived from an Alu element in Pol III-related leukodystrophy
Hypomyelinating leukodystrophy-7 (HLD7)
ASD, DD, ID

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1187R001 
 splice_site_variant 
 c.3429+1G>A 
  
 De novo 
  
 Simplex 
 GEN1187R002 
 intron_variant 
 c.2479-375G>A 
  
 De novo 
  
 Simplex 
 GEN1187R003 
 intron_variant 
 c.2901+1440G>A 
  
 De novo 
  
 Simplex 
 GEN1187R004 
 intron_variant 
 c.2787+988G>A 
  
 De novo 
  
 Simplex 
 GEN1187R005 
 stop_gained 
 c.2131A>T 
 p.Lys711Ter 
 De novo 
  
 Simplex 
 GEN1187R006 
 missense_variant 
 c.4108C>T 
 p.Pro1370Ser 
 De novo 
  
 Simplex 
 GEN1187R007 
 intron_variant 
 c.1909+6T>C 
  
 De novo 
  
 Simplex 
 GEN1187R008a 
 missense_variant 
 c.1451G>A 
 p.Arg484Gln 
 Familial 
 Paternal 
  
 GEN1187R008b 
 intron_variant 
 c.645+312C>T 
  
 Familial 
 Maternal 
  
 GEN1187R009a 
 splice_region_variant 
 c.1771-6C>G 
  
 Familial 
 Maternal 
 Simplex 
 GEN1187R009b 
 missense_variant 
 c.791C>T 
 p.Pro264Leu 
 Familial 
 Paternal 
 Simplex 
 GEN1187R010 
 synonymous_variant 
 c.3342C>T 
 p.Ser1114%3D 
 De novo 
  
  
 GEN1187R011 
 stop_gained 
 c.643C>T 
 p.Gln215Ter 
 Familial 
 Maternal 
 Multiplex 
 GEN1187R012a 
 intron_variant 
 c.1909+22G>A 
  
 Familial 
 Both parents 
 Multiplex 
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
10
Duplication
 1
 
10
Deletion-Duplication
 16
 

No Animal Model Data Available

 

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