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Relevance to Autism

De novo missense variants in the POLR2A gene have been identified in ASD probands from the Autism Sequencing Consortium (Neale et al., 2012; Satterstrom et al., 2020) and the MSSNG cohort (Yuen et al., 2017). Heterozygous variants in the POLR2A gene are responsible for neurodevelopmental disorder with hypotonia and variable intellectual and behavioral abnormalities (NEDHIB; OMIM 618603), a neurodevelopmental disorder characterized by characterized by early-onset hypotonia, delayed walking, poor speech, and impaired intellectual development; autistic behavior or autism spectrum disorder was reported in a subset of affected individuals (Haijes et al., 2019; Hansen et al., 2021). More recently, Evans et al., 2022 described a 31-year-old female with complex autism spectrum disorder involving epilepsy, strabismus, and self-injurious behavior who was identified with a novel de novo and potentially damaging missense variant in the POLR2A gene.

Molecular Function

This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. The product of this gene contains a carboxy terminal domain composed of heptapeptide repeats that are essential for polymerase activity. These repeats contain serine and threonine residues that are phosphorylated in actively transcribing RNA polymerase. In addition, this subunit, in combination with several other polymerase subunits, forms the DNA binding domain of the polymerase, a groove in which the DNA template is transcribed into RNA.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Patterns and rates of exonic de novo mutations in autism spectrum disorders.
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
DD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
ASD
DD, ID, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
Germline mutation in POLR2A: a heterogeneous
DD, ID
ASD, epilepsy/seizures
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
De Novo Heterozygous POLR2A Variants Cause a Neurodevelopmental Syndrome with Profound Infantile-Onset Hypotonia
DD
ASD or autistic behavior, ID, epilepsy/seizures
Recent Recommendation
Complex Autism Spectrum Disorder with Epilepsy
ASD, DD, epilepsy/seizures
Recent Recommendation
Craniosynostosis
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1312R001 
 missense_variant 
 c.4768T>A 
 p.Ser1590Thr 
 De novo 
  
  
 GEN1312R002 
 synonymous_variant 
 c.2361C>T 
 p.Val787= 
 De novo 
  
 Simplex 
 GEN1312R003 
 missense_variant 
 c.3442G>A 
 p.Ala1148Thr 
 De novo 
  
 Multiplex 
 GEN1312R004 
 intron_variant 
 c.93+5036C>T 
  
 De novo 
  
 Simplex 
 GEN1312R005 
 intron_variant 
 c.93+4119_93+4129del 
  
 De novo 
  
 Multiplex 
 GEN1312R006 
 intron_variant 
 c.93+4119_93+4129del 
  
 De novo 
  
 Multiplex 
 GEN1312R007 
 missense_variant 
 c.1112C>T 
 p.Pro371Leu 
 De novo 
  
 Simplex 
 GEN1312R008 
 missense_variant 
 c.1370T>C 
 p.Ile457Thr 
 De novo 
  
 Simplex 
 GEN1312R009 
 missense_variant 
 c.1592A>G 
 p.Asn531Ser 
 De novo 
  
 Simplex 
 GEN1312R010 
 inframe_deletion 
 c.2006_2008del 
 p.Tyr669del 
 De novo 
  
 Simplex 
 GEN1312R011 
 stop_gained 
 c.2098C>T 
 p.Gln700Ter 
 De novo 
  
 Simplex 
 GEN1312R012 
 stop_gained 
 c.2203C>T 
 p.Gln735Ter 
 De novo 
  
 Simplex 
 GEN1312R013 
 missense_variant 
 c.2207C>T 
 p.Thr736Met 
 De novo 
  
 Simplex 
 GEN1312R014 
 inframe_deletion 
 c.2262_2264del 
 p.Ser755del 
 De novo 
  
 Simplex 
 GEN1312R015 
 missense_variant 
 c.2306T>C 
 p.Met769Thr 
 De novo 
  
  
 GEN1312R016 
 missense_variant 
 c.2543T>C 
 p.Ile848Thr 
 De novo 
  
  
 GEN1312R017 
 missense_variant 
 c.3325T>C 
 p.Tyr1109His 
 De novo 
  
 Simplex 
 GEN1312R018 
 missense_variant 
 c.3371T>C 
 p.Leu1124Pro 
 De novo 
  
 Simplex 
 GEN1312R019 
 inframe_deletion 
 c.3373_3375del 
 p.Lys1125del 
 De novo 
  
 Simplex 
 GEN1312R020 
 missense_variant 
 c.3752A>G 
 p.Asn1251Ser 
 De novo 
  
 Simplex 
 GEN1312R021 
 missense_variant 
 c.4808G>A 
 p.Arg1603His 
 De novo 
  
 Simplex 
 GEN1312R022 
 frameshift_variant 
 c.5298dup 
 p.Pro1767ThrfsTer7 
 De novo 
  
  
 GEN1312R023 
 missense_variant 
 c.4985C>A 
 p.Pro1662His 
 De novo 
  
  
 GEN1312R024 
 inframe_deletion 
 c.1314_1319del 
 p.His439_Leu440del 
 De novo 
  
  
 GEN1312R025 
 missense_variant 
 c.3281C>T 
 p.Ser1094Phe 
 De novo 
  
  
 GEN1312R026 
 missense_variant 
 c.3407C>T 
 p.Thr1136Ile 
 De novo 
  
  
 GEN1312R027 
 missense_variant 
 c.3752A>G 
 p.Asn1251Ser 
 De novo 
  
  
 GEN1312R028 
 missense_variant 
 c.3752A>G 
 p.Asn1251Ser 
 De novo 
  
  
 GEN1312R029 
 missense_variant 
 c.4252G>A 
 p.Gly1418Arg 
 De novo 
  
  
 GEN1312R030 
 frameshift_variant 
 c.5440_5441del 
 p.Gln1814ValfsTer99 
 Familial 
 Maternal 
  
 GEN1312R031 
 missense_variant 
 c.83C>G 
 p.Pro28Arg 
 Unknown 
  
  
 GEN1312R032 
 missense_variant 
 c.323G>A 
 p.Arg108His 
 Unknown 
  
  
 GEN1312R033 
 missense_variant 
 c.418C>T 
 p.Arg140Trp 
 Unknown 
  
  
 GEN1312R034 
 missense_variant 
 c.3275C>T 
 p.Ala1092Val 
 Unknown 
  
  
 GEN1312R035 
 missense_variant 
 c.1367T>C 
 p.Val456Ala 
 De novo 
  
  
 GEN1312R036 
 missense_variant 
 c.1275T>G 
 p.Asp425Glu 
 De novo 
  
  
 GEN1312R037 
 missense_variant 
 c.1861A>C 
 p.Ile621Leu 
 De novo 
  
  
 GEN1312R038 
 missense_variant 
 c.1423C>T 
 p.Arg475Cys 
 Unknown 
  
 Simplex 
 GEN1312R039 
 missense_variant 
 c.1424G>A 
 p.Arg475His 
 Unknown 
  
  
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Deletion-Duplication
 29
 
17
Deletion-Duplication
 20
 
17
Duplication
 8
 
17
Duplication
 1
 
17
Duplication
 3
 
17
Deletion-Duplication
 5
 
17
Duplication
 1
 
17
Duplication
 1
 

No Animal Model Data Available

 

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