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Relevance to Autism

Li et al., 2023 reported three unrelated patients presenting with a neurodevelopmental disorder caused by PLPPR4 haploinsufficiency that was characterized by mild intellectual disability, language delay or disorder, motor delay, and autistic behavior (including a diagnosis of autism spectrum disorder in one patient); subsequent functional characterization of iPSC-derived neurons from a patient with a de novo heterozygous PLPPR4 deletion demonstrated reduced density of dendritic protrusions, shorter neurites, and reduced axon length. Additional de novo variants in this gene, including a de novo loss-of-function variant and two de novo missense variants, have been reported in ASD probands (Satterstrom et al., 2020; Zhou et al., 2022; Trost et al., 2022). PLPPR4 +/- mice were shown to display abnormal function in cortical networks, reduced resilience in stress-related behaviors, reduced social interaction, and a significant decrease in prepulse inhibition compared to wild-type mice in Vogt et al., 2015. Schneider et al., 2017 demonstrated that PLPPR4 -/- mice displayed increased ambulation, increased speed of locomotion, increased anxiety and stereotypic behaviors including rearing, leaning, and self-grooming.

Molecular Function

The protein encoded by this gene belongs to the lipid phosphate phosphatase (LPP) family. LPPs catalyze the dephosphorylation of a number of bioactive lipid mediators that regulate a variety of cell functions. This protein is specifically expressed in neurons. It is located in the membranes of outgrowing axons and has been shown to be important for axonal outgrowth during development and regenerative sprouting.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Molecular cause and functional impact of altered synaptic lipid signaling due to a prg-1 gene SNP.
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Plasticity-Related Gene 1 Affects Mouse Barrel Cortex Function via Strengthening of Glutamatergic Thalamocortical Transmission.
Support
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
ASD, DD, ID
Epilepsy/seizures
Recent Recommendation
Altered synaptic phospholipid signaling in PRG-1 deficient mice induces exploratory behavior and motor hyperactivity resembling psychiatric disorders.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN972R001 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN972R002 
 stop_gained 
 c.4C>T 
 p.Gln2Ter 
 De novo 
  
  
 GEN972R003 
 splice_site_variant 
 c.408+2T>C 
 p.? 
 Unknown 
  
  
 GEN972R004 
 missense_variant 
 c.1394C>A 
 p.Ser465Tyr 
 De novo 
  
  
 GEN972R005 
 splice_site_variant 
 c.223-1G>T 
  
 De novo 
  
  
 GEN972R006 
 synonymous_variant 
 c.894A>G 
 p.Arg298%3D 
 De novo 
  
  
 GEN972R007 
 missense_variant 
 G>T 
  
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Deletion-Duplication
 16
 
1
Deletion
 3
 
1
Deletion
 1
 
1
Deletion
 8
 
1
Deletion
 1
 
1
Deletion
 1
 
1
Deletion
 1
 
1
Duplication
 1
 

Model Summary

Plppr4 knockout mice show induced exploratory behavior, increased activity, and increased epileptic seizure.

References

Type
Title
Author, Year
Primary
Synaptic PRG-1 modulates excitatory transmission via lipid phosphate-mediated signaling.
Additional
Molecular cause and functional impact of altered synaptic lipid signaling due to a prg-1 gene SNP.
Additional
Altered synaptic phospholipid signaling in PRG-1 deficient mice induces exploratory behavior and motor hyperactivity resembling psychiatric disorders.

M_PLPPR4_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Plppr4 gene was disrupted by inserting an IRES-LacZ-MC1-Neo cassette, which deletes the extracellular domains coded by exons 5 and 6 and blocks translation of the intracellular tail coded by exon 7. The last 119 bp of exon 4, entire exons 5 and 6 and the first 494 bp of exon 7 were replaced with a cassette containing the 5 end three stop codons in every frame followed by an internal ribosome entry site, the lacZ reporter coding sequence, an independent promoter (MC1)-controlled neomycin-resistance gene, and a polyadenylation sequence.
Allele Type: Knockout
Strain of Origin:
Genetic Background: C57BL/6
ES Cell Line: Not specified
Mutant ES Cell Line: E14-TG2a-derived embryonic stem (ES) cells
Model Source: Nitsch laboratory, Charite, Universitaetsmedizin Berlin (PMID 19766573)

M_PLPPR4_2_KO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Plppr4 gene was disrupted by inserting an IRES-LacZ-MC1-Neo cassette, which deletes the extracellular domains coded by exons 5 and 6 and blocks translation of the intracellular tail coded by exon 7. The last 119 bp of exon 4, entire exons 5 and 6 and the first 494 bp of exon 7 were replaced with a cassette containing the 5 end 3 stop codons in every frame followed by an internal ribosome entry site, the lacZ reporter coding sequence, an independent promoter (MC1)-controlled neomycin-resistance gene, and a polyadenylation sequence. Plppr4 heterozygous mice are an animal correlate for human monoallelic PRG-1-R345T carriers who only have one functional prg-1 allele.
Allele Type: Knockout
Strain of Origin:
Genetic Background: C57BL/6
ES Cell Line: Not specified
Mutant ES Cell Line: E14-TG2a-derived embryonic stem (ES) cells
Model Source: Nitsch laboratory, Charite, Universitaetsmedizin Berlin (PMID 19766573)

M_PLPPR4_3_KO_HM_MOSAIC

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Mosaic Plppr4 KO mice with deletion of exons 4 to 6 in a subset of CA1 pyramidal neurons following in utero injection of cre recombinase, used for conducting single cell studies in cells with loss of of Plppr4. Authors have indicated in the study that Plppr4 is exclusively expressed in neurons, using ultrastructural studies to indicate that it is expressed in the postsynaptic structures of hippocampal glutamatergic neurons
Allele Type: Mosaic
Strain of Origin:
Genetic Background: C57BL/6
ES Cell Line: Not specified
Mutant ES Cell Line: E14-TG2a-derived embryonic stem (ES) cells
Model Source: Nitsch laboratory, Charite, Universitaetsmedizin Berlin (PMID 19766573)

M_PLPPR4_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Motor coordination and balance2
Increased
Description: Mutants display increased latency to fall off the accelerating rotarod and reach higher speeds before they fall compared to controls.
Exp Paradigm: NA
 Accelerating rotarod test
 Adult
General locomotor activity: ambulatory activity2
Increased
Description: Mutants travel longer distances on the open field compared to controls.
Exp Paradigm: NA
 Open field test
 Adult
General locomotor activity2
Increased
Description: Mutants travel with greater speed compared to controls on the open field.
Exp Paradigm: NA
 Open field test
 Adult
Brain size1
Decreased
Description: Mutants show decreased brain weight and size compared to controls.
Exp Paradigm: Measurement of tissue weight
 Measurement of tissue weight
 1.4-2 months
Brain size1
Decreased
Description: Mutants show decreased brain weight and size compared to controls.
Exp Paradigm: Gross necroscopy
 Gross necroscopy
 1.4-2 months
Miniature post synaptic current frequency: excitatory1
Increased
Description: Mutants exhibit increased mepsc frequency compared to controls.
Exp Paradigm: Glutamatergic currents at similar stimulation intensities and stimulation electrode positions were recorded
 Whole-cell patch clamp
 3 weeks
Presynaptic function: vesicle recycling1
Decreased
Description: Mutants show reduced uptake of fluorescence-labeled lipids (neuronsfluorescence-coupled phosphatidic acid) in neurons when compared to wildtype.
Exp Paradigm: NA
 Immunohistochemistry
 3 weeks
Network excitability1
Increased
Description: Mutants were highly hyperexcitable compared to controls, detectable by increased fepsp slope.
Exp Paradigm: Extracellular field epsps evoked by schaffer collateral stimulation in the stratum radiatum of the ca1 hippocampal region were recorded.
 Whole-cell patch clamp
 3 weeks
Stereotypy2
Increased
Description: Mutants display stereotypic behaviors in the home cage and on the open field compared to controls.
Exp Paradigm: Home cage behavior
 Home cage behavior
 Adult
Self grooming: perseveration2
Increased
Description: Mutants display increased self grooming behaviors in the open field compared to controls.
Exp Paradigm: NA
 Open field test
 Adult
Stereotypy2
Increased
Description: Mutants display stereotypic behaviors in the home cage and on the open field compared to controls.
Exp Paradigm: Open field test
 Open field test
 Adult
Seizures1
Increased
Description: Mutants show increased spontaneous seizures compared to controls.
Exp Paradigm: NA
 General observations
 2.9 weeks
Electroencephalogram (eeg): signature of seizure/epilepsy1
Increased
Description: Mutants exhibit hypersynchronized activity, preictal events, ictal events and tonic-clonic seizures, compared to controls. mutants exhibit interictal discharges and seizure-like events in gamma oscillation recordings of the hippocampal network compared to controls, following carbachol administration.
Exp Paradigm: In vivo electrographic recordings using intracranial, epidural electrodes above the somatosensory cortex; field potential shifts were recorded
 Electroencephalogram (eeg)
 0.7-1 months; 3 weeks
Rearing behavior2
Abnormal
Description: Mutants display increased leaning frequency and reduced rearing behavior compared to controls in the small open filed. mutants display decreased rearing and no change in leaning frequency compared to controls in the large open field.
Exp Paradigm: NA
 Open field test
 Adult
Size/growth1
Decreased
Description: Mutants show decreased body weight compared to controls.
Exp Paradigm: NA
 Body weight measurement
 P9-35
Mortality/lethality1
Increased
Description: Mutants show increased mortality (50%) around the third week of life compared to controls.
Exp Paradigm: NA
 General observations
 3 weeks
Anxiety2
Increased
Description: Mutants travel greater path lengths at the edges of the open field than the center, compared to controls.
Exp Paradigm: NA
 Open field test
 Adult
Targeted expression1
Decreased
Description: Mutants show absence of plppr4 protein in immunohistochemical analysis of the hippocampal ca1 region and in western blot analyses of whole brain homogenates, compared to controls. correct homologous recombination was confirmed in mutants.
Exp Paradigm: Southern blot
 Southern blot
 Adult
Targeted expression1
Decreased
Description: Mutants show absence of plppr4 protein in immunohistochemical analysis of the hippocampal ca1 region and in western blot analyses of whole brain homogenates, compared to controls. correct homologous recombination was confirmed in mutants.
Exp Paradigm: Immunohistochemistry
 Immunohistochemistry
 Adult
Targeted expression1
Decreased
Description: Mutants show absence of plppr4 protein in immunohistochemical analysis of the hippocampal ca1 region and in western blot analyses of whole brain homogenates, compared to controls. correct homologous recombination was confirmed in mutants.
Exp Paradigm: Western blot
 Western blot
 Adult
Mortality/lethality1
 No change
 General observations
 P0
Size/growth1
 No change
 Body weight measurement
 P5-6, 1.4-1.9 months
Anatomical projections and connectivity1
 No change
 Immunohistochemistry
 3 weeks
Hippocampal morphology1
 No change
 Immunohistochemistry
 3 weeks
Neuronal number: interneurons1
 No change
 Immunohistochemistry
 3 weeks
Neuroreceptor levels: glutamate receptors: ampa receptors1
 No change
 Immunohistochemistry
 3 weeks
Neuroreceptor levels: glutamate receptors: ampa receptors1
 No change
 Western blot
 3 weeks
Neuroreceptor levels: glutamate receptors: nmda receptors1
 No change
 Immunohistochemistry
 3 weeks
Neuroreceptor levels: glutamate receptors: nmda receptors1
 No change
 Western blot
 3 weeks
Synapse density: excitatory1
 No change
 Immunohistochemistry
 3 weeks
Synapse density: excitatory1
 No change
 Immunohistochemistry
 3 weeks
Synaptic morphology1
 No change
 Immunohistochemistry
 3 weeks
Synaptic morphology1
 No change
 Western blot
 3 weeks
Synaptic neuroreceptors1
 No change
 Immunohistochemistry
 3 weeks
Synaptic neuroreceptors1
 No change
 Western blot
 3 weeks
Action potential property: amplitude1
 No change
 Whole-cell current clamp
 3 weeks
Electroencephalogram (eeg) frequency: rhythmic1
 No change
 Electroencephalogram (eeg)
 3 weeks
Intrinsic membrane properties1
 No change
 Whole-cell current clamp
 3 weeks
Membrane potential1
 No change
 Whole-cell current clamp
 3 weeks
Miniature post synaptic current amplitude: excitatory1
 No change
 Whole-cell patch clamp
 3 weeks
Miniature post synaptic current amplitude: inhibitory1
 No change
 Whole-cell patch clamp
 3 weeks
Miniature post synaptic current frequency: inhibitory1
 No change
 Whole-cell patch clamp
 3 weeks
Synaptic neuroreceptor ratio (nmdar/ampar) dependent transmission1
 No change
 Whole-cell patch clamp
 3 weeks
Tonic currents through extrasynaptic receptors1
 No change
 Whole-cell patch clamp
 3 weeks
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_PLPPR4_2_KO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Local field potential2
Decreased
Description: Plppr4 heterozygotes display increased amplitude of local field potentials in the whisker-specific cortical barrel in response to the second whisker stimulation, compared to controls, indicating a reduction in sensorimotor gating.
Exp Paradigm: Pre-attentive cortical information processing was measured by sensory gating in a double-pulse whisker stimulation model.
 Whole-cell patch clamp
 Adult
Intrinsic bursting events or spikes2
Increased
Description: Plppr4 heterozygotes display increase in number and duration of multiunit activity burst when compared to wildtype control mice, indicating a shift in excitatory/inhibitory balance toward excitation within cortical microcircuitries.
Exp Paradigm: NA
 Whole-cell patch clamp
 Adult
Presynaptic function: vesicle recycling2
Decreased
Description: Plppr4 heterozygous neurons show decreased capacity to internalize lysophosphatidic acid compared to controls.
Exp Paradigm: NA
 Fluorescence microscopy
 Adult
Network excitability1
Increased
Description: Mutants were highly hyperexcitable compared to controls, detectable by increased fepsp slope.
Exp Paradigm: Extracellular field epsps evoked by schaffer collateral stimulation in the stratum radiatum of the ca1 hippocampal region were recorded.
 Whole-cell patch clamp
 3 weeks
Sensorimotor gating2
Decreased
Description: Plppr4 heterozygotes display decrease of prepulse inhibition compared to controls.
Exp Paradigm: NA
 Prepulse inhibition
 Adult
Social approach2
Decreased
Description: Plppr4 heterozygotes display reduced social interaction index compared to controls.
Exp Paradigm: NA
 Three-chamber social approach test
 Adult
Acute stress response2
Increased
Description: Plppr4 heterozygotes display increased duration of immobility after acute environmental stress compared to controls.
Exp Paradigm: NA
 Tail suspension test
 Adult
Targeted expression1
Decreased
Description: Mutants show correct homologous recombination in southern blot and pcr compared to controls.
Exp Paradigm: Polymerase chain reaction (pcr)
 Polymerase chain reaction (pcr)
 Adult
Targeted expression1
Decreased
Description: Mutants show correct homologous recombination in southern blot and pcr compared to controls.
Exp Paradigm: Southern blot
 Southern blot
 Adult
Mortality/lethality1
 No change
 General observations
 3 weeks
Depression2
 No change
 Tail suspension test
 Adult
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_PLPPR4_3_KO_HM_MOSAIC

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Miniature post synaptic current frequency: excitatory1
Increased
Description: Mutants show increase in frequency of stimulus evoked epscs compared to controls, indicating that increase in neuronal excitability is due to the lack of plppr4 at the postsynaptic side.
Exp Paradigm: Recordings from gfp+ (prg-1 cko genotype) and gfp- (wt genotype) ca1 pyramidal neurons were performed in acute hippocampal slices.
 Whole-cell patch clamp
 3 weeks
Miniature post synaptic current amplitude: excitatory1
Increased
Description: Mutants show increase in amplitudes of stimulus evoked epscs compared to controls.
Exp Paradigm: Recordings from gfp+ (prg-1 cko genotype) and gfp- (wt genotype) ca1 pyramidal neurons were performed in acute hippocampal slices. the majority of cells expressed prg-1, as did, consequently. majority of cells expressed plppr4 as did the majority of afferents on a mutant ca1 pyramidal cell derived from wildtype ca3 neurons.
 Whole-cell patch clamp
 3 weeks
Seizures1
 No change
 General observations
 3 weeks
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Physiological parameters, Repetitive behavior, Sensory, Social behavior

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