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Relevance to Autism

A de novo missense variant in the PLCD4 gene was identified in an ASD proband from the Autism Sequencing Consortium in De Rubeis et al., 2014, while a de novo frameshift variant in this gene was identified in an ASD proband from the Simons Simplex Collection in Iossifov et al., 2014. TADA analysis of 4,504 ASD trios and 3,012 unaffected control/siblings trios from trio-based exome/genome sequencing studies identified PLCD4 as an ASD candidate gene with a q-value < 0.1 (Du et al., 2019).

Molecular Function

This gene encodes a member of the delta class of phospholipase C enzymes. Phospholipase C enzymes play a critical role in many cellular processes by hydrolyzing phosphatidylinositol 4,5-bisphosphate into two intracellular second messengers, inositol 1,4,5-trisphosphate and diacylglycerol.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Recent Recommendation
Nonrandom occurrence of multiple de novo coding variants in a proband indicates the existence of an oligogenic model in autism.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1114R001 
 missense_variant 
 c.295C>T 
 p.Arg99Cys 
 De novo 
  
  
 GEN1114R002 
 frameshift_variant 
 c.2092_2095dup 
 p.Leu699HisfsTer10 
 De novo 
  
 Simplex 
 GEN1114R003 
 missense_variant 
 c.1558A>G 
 p.Ile520Val 
 Unknown 
  
  
 GEN1114R004 
 synonymous_variant 
 c.990G>C 
 p.Gly330%3D 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 

No Animal Model Data Available

No PIN Data Available
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