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Relevance to Autism

A de novo missense variant in the PLAA gene (p.Ile609Thr) was identified in a male ASD proband from a simplex family from the MSSNG cohort in Yuen et al., 2007; functional assessment of this variant and a previously unreported ASD-associated missense variant in the PLAA gene (p.Leu795Met) in Iacomino et al., 2024 demonstrated that both missense variants affected the PLAA interactome and resulted in significantly reduced binding to VCP/p97. A de novo splice-region variant in this gene was also identified in an ASD proband from the Simons Simplex Collection (Zhou et al., 2022).

Molecular Function

Predicted to enable ubiquitin binding activity. Involved in cellular response to lipopolysaccharide; macroautophagy; and positive regulation of phospholipase A2 activity. Located in cytoplasm; extracellular exosome; and nucleus. Plays a role in protein ubiquitination, sorting and degradation through its association with VCP (Papadopoulos et al., 2017). Biallelic variants in the PLAA gene are responsible for neurodevelopmental disorder with progressive microcephaly, spasticity, and brain anomalies (NDMSBA; OMIM 617527), an autosomal recessive neurodevelopmental disorder characterized by infantile onset of progressive microcephaly and spasticity and severe global developmental delay resulting in profoundly impaired intellectual development and severely impaired or absent motor function (Falik Zaccai et al., 2017; Hall et al., 2017).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Allelic heterogeneity and abnormal vesicle recycling in PLAA-related neurodevelopmental disorders
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
PLAA Mutations Cause a Lethal Infantile Epileptic Encephalopathy by Disrupting Ubiquitin-Mediated Endolysosomal Degradation of Synaptic Proteins
Neurodevelopmental disorder with progressive micro
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Phospholipase A2-activating protein is associated with a novel form of leukoencephalopathy
Neurodevelopmental disorder with progressive micro
Support
VCP/p97 cooperates with YOD1, UBXD1 and PLAA to drive clearance of ruptured lysosomes by autophagy
Support
Next-generation phenotyping integrated in a national framework for patients with ultrarare disorders improves genetic diagnostics and yields new molecular findings
Epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1441R001 
 missense_variant 
 c.1826T>C 
 p.Ile609Thr 
 De novo 
  
 Simplex 
 GEN1441R002 
 missense_variant 
 c.2383C>A 
 p.Leu795Met 
 De novo 
  
 Simplex 
 GEN1441R003 
 splice_region_variant 
 c.1823-4A>G 
  
 De novo 
  
 Simplex 
 GEN1441R004 
 missense_variant 
 c.16A>G 
 p.Thr6Ala 
 Unknown 
  
  
 GEN1441R005a 
 frameshift_variant 
 c.240_241insTAG 
 p.Tyr80_Pro81insTer 
 Unknown 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
9
Deletion
 7
 
9
Deletion
 2
 
9
N/A
 1
 
9
Duplication
 1
 
9
Duplication
 1
 
9
Duplication
 8
 
9
Duplication
 3
 
9
Duplication
 3
 
9
Duplication
 1
 

No Animal Model Data Available

 

No Interactions Available
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