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Relevance to Autism

Inherited loss-of-function (LoF) variants in the PHLPP1 gene were found to be exclusively transmitted to two ASD probands from two independent families (Wilfert et al., 2021), while additional de novo variants in this gene, including a de novo LoF variant, have also been reported in ASD probands (Zhou et al., 2022; Trost et al., 2022; More et al., 2023).

Molecular Function

This gene encodes a member of the serine/threonine phosphatase family. The encoded protein promotes apoptosis by dephosphorylating and inactivating the serine/threonine kinase Akt, and functions as a tumor suppressor in multiple types of cancer. Increased expression of this gene may also play a role in obesity and type 2 diabetes by interfering with Akt-mediated insulin signaling.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Recent ultra-rare inherited variants implicate new autism candidate risk genes
ASD
Support
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1388R001 
 stop_gained 
 c.757G>T 
 p.Gly253Ter 
 Familial 
  
 Simplex 
 GEN1388R002 
 frameshift_variant 
 c.2235_2238del 
 p.Asp745GlufsTer14 
 Familial 
  
 Simplex 
 GEN1388R003 
 missense_variant 
 c.967T>C 
 p.Ser323Pro 
 Unknown 
  
  
 GEN1388R004 
 missense_variant 
 c.967T>C 
 p.Ser323Pro 
 Unknown 
  
  
 GEN1388R005 
 inframe_deletion 
 c.78_119del 
 p.Ala27_Ala40del 
 De novo 
  
 Simplex 
 GEN1388R006 
 missense_variant 
 c.320C>T 
 p.Ala107Val 
 De novo 
  
 Simplex 
 GEN1388R007 
 missense_variant 
 c.4501G>A 
 p.Gly1501Arg 
 De novo 
  
 Simplex 
 GEN1388R008 
 synonymous_variant 
 c.813G>A 
 p.Leu271= 
 De novo 
  
  
 GEN1388R009 
 frameshift_variant 
 c.1872del 
 p.Leu625Ter 
 De novo 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
18
Duplication
 2
 
18
Duplication
 2
 
18
Duplication
 1
 
18
Duplication
 2
 
18
Deletion
 2
 
18
Deletion
 5
 
18
Deletion
 4
 
18
Deletion
 2
 
18
Deletion
 8
 
18
Deletion-Duplication
 5
 
18
Deletion-Duplication
 5
 

No Animal Model Data Available

 

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