HELP     Sign In
Search

Relevance to Autism

De novo missense variants in the PHF14 gene have been identified in an ASD proband from the SPARK cohort (Feliciano et al., 2019) and the Autism Sequencing Consortium cohort (Satterstrom et al., 2020), while additional rare de novo non-coding variation in this gene has also been observed in ASD probands (Sanders et al., 2015; Yuen et al., 2017). Zhou et al., 2022 reported that PHF14 forms a complex with MECP2 and TCF20; in the same report, the authors described two individuals with de novo variants in PHF14 who presented with neurodevelopmental phenotypes, including a patient with a de novo PHF14 missense variant that abolished the MECP2-PHF14-TCF20 interaction.

Molecular Function

Predicted to enable histone binding activity. Predicted to be involved in histone H3-K14 acetylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including lung alveolus development; negative regulation of mesenchymal cell proliferation involved in lung development; and negative regulation of platelet-derived growth factor receptor-alpha signaling pathway. Predicted to be located in nucleus. Predicted to be part of MOZ/MORF histone acetyltransferase complex.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Recent Recommendation
Disruption of MeCP2-TCF20 complex underlies distinct neurodevelopmental disorders
DD
Autistic features

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1298R001 
 missense_variant 
 c.997G>A 
 p.Ala333Thr 
 De novo 
  
  
 GEN1298R002 
 missense_variant 
 c.769G>A 
 p.Glu257Lys 
 De novo 
  
  
 GEN1298R003 
 intron_variant 
 c.2312+41A>T 
  
 De novo 
  
  
 GEN1298R004 
 intron_variant 
 c.2773-7350dup 
  
 De novo 
  
 Simplex 
 GEN1298R005 
 intron_variant 
 c.1046-428G>A 
  
 De novo 
  
 Simplex 
 GEN1298R006 
 intron_variant 
 c.2077-348G>A 
  
 De novo 
  
 Multiplex 
 GEN1298R007 
 intron_variant 
 c.1981-747C>T 
  
 De novo 
  
 Simplex 
 GEN1298R008 
 intron_variant 
 c.2180+722G>A 
  
 De novo 
  
 Simplex 
 GEN1298R009 
 5_prime_UTR_variant 
 c.-347A>G 
  
 De novo 
  
 Simplex 
 GEN1298R010 
 intron_variant 
 c.2181-946A>G 
  
 De novo 
  
 Multiplex 
 GEN1298R011 
 intron_variant 
 c.2772+16252T>C 
  
 De novo 
  
 Multiplex 
 GEN1298R012 
 intron_variant 
 c.2772+9398T>C 
  
 De novo 
  
 Multiplex 
 GEN1298R013 
 intron_variant 
 c.901-2727A>G 
  
 De novo 
  
 Multiplex 
 GEN1298R014 
 intron_variant 
 c.2772+28080G>T 
  
 De novo 
  
 Multiplex 
 GEN1298R015 
 intron_variant 
 c.2655-18575C>G 
  
 De novo 
  
 Simplex 
 GEN1298R016 
 intron_variant 
 c.2773-3814T>C 
  
 De novo 
  
 Simplex 
 GEN1298R017 
 stop_gained 
 c.1573A>T 
 p.Arg525Ter 
 De novo 
  
  
 GEN1298R018 
 missense_variant 
 c.964T>G 
 p.Cys322Gly 
 De novo 
  
  
 GEN1298R019 
 synonymous_variant 
 c.519A>G 
 p.Thr173%3D 
 De novo 
  
  
 GEN1298R020 
 synonymous_variant 
 c.2388A>G 
 p.Gly796%3D 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
7
Deletion-Duplication
 30
 
7
Deletion
 1
 
7
Deletion
 1
 
7
Duplication
 4
 
7
Duplication
 1
 
7
Duplication
 1
 
7
Duplication
 1
 
7
Deletion
 2
 

No Animal Model Data Available

 

No Interactions Available
HELP
Copyright © 2017 MindSpec, Inc.