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Relevance to Autism

A de novo missense variant that was predicted to be damaging was identified in the PCM1 gene in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2014), while transmitted protein-truncating variants (PTVs) in this gene were observed in ASD probands from the Autism Sequencing Consortium and the iHART cohort (De Rubeis et al., 2014; Ruzzo et al., 2019). TADA analysis of de novo and transmitted variants from iHART, the Simons Simplex Collection, the Autism Sequencing Consortium, and the Autism Genome Project in Ruzzo et al., 2019 identified PCM1 as an ASD candidate gene with a false discovery rate (FDR) < 0.1.

Molecular Function

The protein encoded by this gene is a component of centriolar satellites, which are electron dense granules scattered around centrosomes. Inhibition studies show that this protein is essential for the correct localization of several centrosomal proteins, and for anchoring microtubules to the centrosome.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Recent Recommendation
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1101R001 
 missense_variant 
 c.2981A>G 
 p.Glu994Gly 
 De novo 
  
 Simplex 
 GEN1101R002 
 stop_gained 
 c.1423C>T 
 p.Gln475Ter 
 Familial 
 Maternal 
 Multiplex 
 GEN1101R003 
 frameshift_variant 
 c.6006_6007del 
 p.Glu2003AspfsTer6 
 Familial 
 Maternal 
 Multiplex 
 GEN1101R004 
 missense_variant 
 c.3595A>G 
 p.Ser1199Gly 
 Unknown 
  
  
 GEN1101R005 
 splice_region_variant 
 c.1072-7T>A 
  
 De novo 
  
 Simplex 
 GEN1101R006a 
 missense_variant 
 c.1988T>C 
 p.Met663Thr 
 Familial 
 Paternal 
  
 GEN1101R006b 
 missense_variant 
 c.3836C>G 
 p.Thr1279Arg 
 Familial 
 Maternal 
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
8
Deletion-Duplication
 44
 
8
Deletion-Duplication
 8
 
8
Duplication
 1
 
8
Duplication
 5
 
8
Duplication
 3
 
8
Duplication
 5
 
8
Duplication
 2
 
8
Duplication
 2
 
8
Duplication
 2
 
8
Duplication
 5
 
8
Duplication
 1
 
8
Duplication
 1
 
8
Deletion
 3
 
8
Duplication
 6
 
8
Duplication
 1
 

No Animal Model Data Available

 

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