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Relevance to Autism

De novo variants in the PC gene have been identified in ASD probands, including a de novo missense variant (p.Pro1042Arg) in a proband from the Simons Simplex Collection (Iossifov et al., 2014; Sanders et al., 2015; Yuen et al., 2016; Yuen et al., 2017; Turner et al., 2017). Targeted sequencing of 136 microcephaly or macrocephaly-related genes and 158 possible ASD risk genes in 536 Chinese ASD probands from the Autism Clinical and Genetic Resources in China (ACGC) cohort in Li et al., 2017 identified additional missense variants in the PC gene, and a inherited loss-of-function variant in this gene was observed in an ASD proband from a multiplex family from the iHART cohort (Ruzzo et al., 2019). Functional assessment of the ASD-associated p.Pro1042Arg missense variant in Drosophila using an overexpression-based strategy in Macrogliese et al., 2022 demonstrated that flies overexpressing PC-p.Pro1042Arg exhibited increased lethality when compared with reference protein, indicating a gain-of-function effect.

Molecular Function

This gene encodes pyruvate carboxylase, which requires biotin and ATP to catalyse the carboxylation of pyruvate to oxaloacetate. The active enzyme is a homotetramer arranged in a tetrahedron which is located exclusively in the mitochondrial matrix. Pyruvate carboxylase is involved in gluconeogenesis, lipogenesis, insulin secretion and synthesis of the neurotransmitter glutamate. Biallelic variants in this gene are associated with pyruvate carboxylase deficiency (OMIM 266150); neurological phenotypes associated with this disease include developmental delay, intellectual disability, and seizures.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Genomic Patterns of De Novo Mutation in Simplex Autism
ASD
Support
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Genome-wide characteristics of de novo mutations in autism
ASD
Recent Recommendation
Drosophila functional screening of de novo variants in autism uncovers damaging variants and facilitates discovery of rare neurodevelopmental diseases
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1330R001 
 missense_variant 
 c.3125C>G 
 p.Pro1042Arg 
 De novo 
  
 Simplex 
 GEN1330R002 
 intron_variant 
 c.2224-15_2224-14del 
  
 De novo 
  
  
 GEN1330R003 
 intron_variant 
 c.-41917C>T 
  
 De novo 
  
 Simplex 
 GEN1330R004 
 intron_variant 
 c.-73757G>A 
  
 De novo 
  
 Multiplex 
 GEN1330R005 
 intron_variant 
 c.-73743T>A 
  
 De novo 
  
 Multiplex 
 GEN1330R006 
 intron_variant 
 c.-29403G>A 
  
 De novo 
  
 Multiplex 
 GEN1330R007 
 intron_variant 
 c.-73757G>A 
  
 De novo 
  
 Multiplex 
 GEN1330R008 
 intron_variant 
 c.-55121C>T 
  
 De novo 
  
 Multiplex 
 GEN1330R009 
 intron_variant 
 c.-29677C>T 
  
 De novo 
  
 Multiplex 
 GEN1330R010 
 missense_variant 
 c.562G>A 
 p.Gly188Ser 
 Unknown 
  
  
 GEN1330R011a 
 missense_variant 
 c.309C>G 
 p.Ile103Met 
 Unknown 
  
  
 GEN1330R012a 
 missense_variant 
 c.1177C>T 
 p.Arg393Cys 
 Unknown 
  
  
 GEN1330R013a 
 missense_variant 
 c.910T>A 
 p.Tyr304Asn 
 Unknown 
  
  
 GEN1330R014 
 missense_variant 
 c.2173G>T 
 p.Gly725Cys 
 Unknown 
  
  
 GEN1330R015a 
 missense_variant 
 c.3214G>A 
 p.Gly1072Ser 
 Unknown 
  
  
 GEN1330R016 
 missense_variant 
 c.2796A>T 
 p.Glu932Asp 
 Unknown 
  
  
 GEN1330R017 
 intron_variant 
 c.-47015C>T 
  
 De novo 
  
 Simplex 
 GEN1330R018 
 frameshift_variant 
 c.3409_3410del 
 p.Leu1137ValfsTer34 
 Familial 
 Paternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
11
Deletion-Duplication
 1
 
11
Deletion
 1
 

No Animal Model Data Available

 

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