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Relevance to Autism

A SNP within the PARD3B gene showed association in the primary analyses of a combined AGP GWA sample (Anney et al., 2012).

Molecular Function

Putative adapter protein involved in asymmetrical cell division and cell polarization processes. May play a role in the formation of epithelial tight junctions.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Individual common variants exert weak effects on the risk for autism spectrum disorderspi.
ASD
Support
Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability
ID
Support
Integrating de novo and inherited variants in 42
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
High prevalence of multilocus pathogenic variation in neurodevelopmental disorders in the Turkish population
DD
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
ASD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Mutations in Human Accelerated Regions Disrupt Cognition and Social Behavior.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN391R001 
 stop_gained 
 c.3129C>G 
 p.Tyr1043Ter 
 De novo 
  
 Simplex 
 GEN391R002 
 missense_variant 
 c.476G>C 
 p.Gly159Ala 
 De novo 
  
  
 GEN391R003 
 intergenic_variant 
 G>T 
  
  
  
 Unknown 
 GEN391R004 
 missense_variant 
 c.1519G>A 
 p.Ala507Thr 
 Familial 
 Maternal 
  
 GEN391R005 
 frameshift_variant 
 c.598_599del 
 p.Met200AspfsTer37 
 Familial 
 Paternal 
  
 GEN391R006 
 splice_site_variant 
 c.2186-726_2186-725delinsG 
  
 Familial 
 Paternal 
  
 GEN391R007 
 missense_variant 
 c.1693G>A 
 p.Glu565Lys 
 Familial 
 paternal/maternal 
  
 GEN391R008 
 frameshift_variant 
 c.2081_2082del 
 p.Val694AspfsTer7 
 De novo 
  
  
 GEN391R009 
 missense_variant 
 c.1424C>T 
 p.Pro475Leu 
 Familial 
 Paternal 
 Simplex 
 GEN391R010a 
 missense_variant 
 c.1222G>A 
 p.Gly408Ser 
 Familial 
 Both parents 
 Simplex 
 GEN391R011a 
 missense_variant 
 c.1403G>A 
 p.Arg468His 
 Unknown 
  
 Simplex 
 GEN391R012 
 synonymous_variant 
 c.2307G>A 
 p.Pro769%3D 
 De novo 
  
  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN391C001 
 intron_variant 
 rs4675502 
 c.2141-24331G>A;c.1955-24331G>A;c.1544-24331G>A 
  
 Autism Genome Project (AGP) 
 Combined (Stages 1 and 2) 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Duplication
 1
 
2
Duplication
 2
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Deletion
 3
 
2
Deletion
 3
 
2
Deletion
 1
 
2
Deletion
 1
 
2
Deletion-Duplication
 10
 
2
Deletion
 3
 

Model Summary

baz-VDRC2915 mutants showed no change in habituation compared to controls. baz-VDRC2914 mutants' initial jump response was impaired.

References

Type
Title
Author, Year
Primary
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.

F_BAZ_1_KD_GAL4:UAS;RNAI-VDRC2915

Model Type: Genetic
Model Genotype: Wild type
Mutation: baz-Gal4 driver line expressing UAS-baz-RNAi.
Allele Type: Loss-of-function
Strain of Origin: Not reported
Genetic Background: Not reported
ES Cell Line:
Mutant ES Cell Line:
Model Source:

F_BAZ_2_KD_GAL4:UAS;RNAI-VDRC2914

Model Type: Genetic
Model Genotype: Wild type
Mutation: baz-Gal4 driver line expressing UAS-baz-RNAi.
Allele Type: Loss-of-function
Strain of Origin: Not reported
Genetic Background: Not reported
ES Cell Line:
Mutant ES Cell Line:
Model Source:

F_BAZ_1_KD_GAL4:UAS;RNAI-VDRC2915

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Habituation to aversive stimuli1
 No change
 Light-off startle jump
 adult stage
Startle response1
 No change
 Light-off startle jump
 adult stage
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

F_BAZ_2_KD_GAL4:UAS;RNAI-VDRC2914

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Startle response1
Decreased
Description: When challenged in the light-off jump paradigm, the mutants' initial jump response was impaired (23% frequency of initial jumping), thus precluding proper assessment of habituation.
 Light-off startle jump
 adult stage
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

 

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