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Relevance to Autism

Homozygous variants in the PAH gene were identified that segregated with ASD in two separate pedigrees (one multiplex, one simplex) consisting of affected children born to consanguineous parents (Yu et al., 2013).

Molecular Function

The PAH gene encodes the enzyme phenylalanine hydroxylase, which is the rate-limiting step in phenylalanine catabolism. Defects in PAH are the cause of phenylketonuria (PKU), non-phenylketonuria hyperphenylalaninemia (Non-PKU HPA), and hyperphenylalaninemia (HPA) [MIM:261600].

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Using whole-exome sequencing to identify inherited causes of autism.
ASD
Support
Diagnostic Yields of Trio-WES Accompanied by CNVseq for Rare Neurodevelopmental Disorders.
ID
Autistic features
Support
Integrating de novo and inherited variants in 42
ASD
Support
The combination of whole-exome sequencing and copy number variation sequencing enables the diagnosis of rare neurological disorders.
Epilepsy/seizures
Support
2022
SCZ
Support
Diagnostic Yield and Novel Candidate Genes by Exome Sequencing in 152 Consanguineous Families With Neurodevelopmental Disorders.
Phenylketonuria
ID
Support
Trio-based exome sequencing reveals a high rate of the de novo variants in intellectual disability
ID
Support
Phenotype-to-genotype approach reveals head-circumference-associated genes in an autism spectrum disorder cohort.
ASD
Macrocephaly
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
ASD
OCD, ID
Support
Recessive gene disruptions in autism spectrum disorder.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN527R001a 
 stop_gained 
 c.704C>T 
 p.Gln235Ter 
 Familial 
 Both parents 
 Multiplex 
 GEN527R002a 
 inframe_deletion 
 c.593_614del 
 p.Tyr198SerfsTer136 
 Familial 
 Both parents 
 Simplex 
 GEN527R003a 
 missense_variant 
 c.930C>T 
 p.Ser310Phe 
 Familial 
 Both parents 
 Simplex 
 GEN527R004a 
 missense_variant 
 c.567C>T 
 p.Thr189Ile 
 Familial 
  
  
 GEN527R004b 
 missense_variant 
 c.159G>A 
 p.Arg53His 
 Familial 
  
  
 GEN527R005a 
 missense_variant 
 c.783G>A 
 p.Arg261Gln 
 Unknown 
  
 Unknown 
 GEN527R005b 
 missense_variant 
 c.843C>T 
 p.Pro281Leu 
 Unknown 
  
 Unknown 
 GEN527R006a 
 missense_variant 
 c.729G>A 
 p.Arg243Gln 
 Familial 
 Paternal 
  
 GEN527R006b 
 missense_variant 
 c.876C>T 
 p.Pro292Leu 
 Familial 
 Maternal 
  
 GEN527R007 
 stop_gained 
 c.815G>T 
 p.Gly272Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN527R008 
 stop_gained 
 c.782C>T 
 p.Arg261Ter 
 Familial 
 Maternal 
 Multiplex 
 GEN527R009 
 splice_site_variant 
 c.441+1G>A 
  
 Familial 
 Paternal 
 Simplex 
 GEN527R010a 
 missense_variant 
 c.194T>C 
 p.Ile65Thr 
 Familial 
 Paternal 
  
 GEN527R010b 
 splice_site_variant 
 c.1315+1G>A 
  
 Familial 
 Maternal 
  
 GEN527R011a 
 synonymous_variant 
 c.474G>A 
 p.Arg158%3D 
 De novo 
  
  
 GEN527R011b 
 synonymous_variant 
 c.468A>G 
 p.Ala156%3D 
 De novo 
  
  
 GEN527R011c 
 synonymous_variant 
 c.465T>G 
 p.Arg155%3D 
 De novo 
  
  
 GEN527R012 
 synonymous_variant 
 c.1314C>T 
 p.Asn438%3D 
 De novo 
  
 Simplex 
 GEN527R013 
 frameshift_variant 
 c.1055del 
 p.Gly352ValfsTer48 
 Familial 
 Maternal 
 Multiplex 
 GEN527R014 
 stop_gained 
 c.561G>A 
 p.Trp187Ter 
 Familial 
 Maternal 
 Multiplex 
 GEN527R015a 
 missense_variant 
 c.1208C>T 
 p.Ala403Val 
 Unknown 
  
 Simplex 
  et al.  
 GEN527R015b 
 missense_variant 
 c.688G>A 
 p.Val230Ile 
 Unknown 
  
 Simplex 
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Duplication
 1
 
12
Deletion
 1
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
PAH phenylalanine hydroxylase 5053 P00439 X-ray crystallography
Fusetti F , et al. 1998
PCBD1 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha 5092 P61457 Y2H
Waters PJ , et al. 2001
QDPR quinoid dihydropteridine reductase 5860 P09417 Y2H
Waters PJ , et al. 2001
RPS24 ribosomal protein S24 6229 P62847 Y2H
Wang J , et al. 2011

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