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Relevance to Autism

PAFAH1B1(+/-) adolescent mice showed significant reductions in elimination and turnover rates of dendritic protrusions of layer V pyramidal neurons and exhibited deficits in social interaction (Sudarov et al., 2013).

Molecular Function

Required for proper activation of Rho GTPases and actin polymerization at the leading edge of locomoting cerebellar neurons and postmigratory hippocampal neurons in response to calcium influx triggered via NMDA receptors. Mutations in this gene are responsible for lissencephaly 1 (LIS1) [MIM:607432].

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Lis1 controls dynamics of neuronal filopodia and spines to impact synaptogenesis and social behaviour.
Support
Assessing Utility of Clinical Exome Sequencing in Diagnosis of Rare Idiopathic Neurodevelopmental Disorders in Indian Population
Lissencephaly 1, DD, epilepsy/seizures
ID
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
DD, ID, epilepsy/seizures
Support
Genome sequencing of 320 Chinese children with epilepsy: a clinical and molecular study
DD, epilepsy/seizures
Support
Next-Generation Sequencing in Korean Children With Autism Spectrum Disorder and Comorbid Epilepsy
ASD
Support
DD, epilepsy/seizures
Support
Abnormalities in Cortical GABAergic Interneurons of the Primary Motor Cortex Caused by Lis1 (Pafah1b1) Mutation Produce a Non-drastic Functional Phenotype
Lissencephaly 1
Highly Cited
Graded reduction of Pafah1b1 (Lis1) activity results in neuronal migration defects and early embryonic lethality.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN630R001 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN630R002 
 frameshift_variant 
 c.897del 
 p.Glu300ArgfsTer33 
 Unknown 
  
  
 GEN630R003 
 frameshift_variant 
 c.1050dup 
 p.Lys351GlufsTer8 
 Unknown 
  
  
 GEN630R004 
 missense_variant 
 c.1067G>A 
 p.Cys356Tyr 
 Unknown 
  
  
 GEN630R005 
 stop_gained 
 c.1111C>T 
 p.Arg371Ter 
 Unknown 
  
  
 GEN630R006 
 missense_variant 
 c.1136A>G 
 p.His379Arg 
 De novo 
  
 Simplex 
 GEN630R007 
 stop_gained 
 c.22C>T 
 p.Arg8Ter 
 De novo 
  
 Simplex 
 GEN630R008 
 intron_variant 
 c.118-11_118-7del 
  
 De novo 
  
 Simplex 
 GEN630R009 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN630R010 
 splice_region_variant 
 c.671+6T>G 
  
 Unknown 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Deletion-Duplication
 51
 
17
Duplication
 1
 
17
Duplication
 3
 
17
Deletion-Duplication
 5
 
17
Duplication
 9
 
17
Duplication
 1
 

Model Summary

PAFAH1B1 playes prominently in dendritic filopodia dynamics and spine turnover implicating reduced dendritic spine density as contributing to developmental autistic-like behavior.

References

Type
Title
Author, Year
Primary
Lis1 controls dynamics of neuronal filopodia and spines to impact synaptogenesis and social behaviour.

M_PAFAH1B1_1_KO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Targeted replacement of part of exon 6 and all of exon 7 with PGKneo in the opposite transcriptional orientation relative to Pafah1b1 (Fig. 1a). The neo disruption eliminates amino acids 164-214 and introduces multiple stop codons into exon 6.
Allele Type:
Strain of Origin: Not specified
Genetic Background: Not Specified
ES Cell Line: Not specified
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_PAFAH1B1_2_CKO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Conditional deletion of exons 3-6 of the PAFAH1B1 gene using CamkII-cre in excitatory neurons of the forebrain
Allele Type: Conditional loss-of-function
Strain of Origin: Not specified
Genetic Background: Not Specified
ES Cell Line: Not specified
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_PAFAH1B1_1_KO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Structural dendritic plasticity1
Decreased
Description: Decreased turnover and elimination rates of filopodia in layer v pyramidal neurons
Exp Paradigm: Transcranial two photon microscopy of layer v pyramidal neurons
 Two-photon microscopy
 3 weeks
Somatosensory cortical map architecture1
Decreased
Description: Decreased density in the number of fliopodia in barrel cortex
Exp Paradigm: NA
 NA
 3 weeks
Dendritic architecture: spine density1
Abnormal
Description: Increase in spine stability and decrease in rate of spine elimination
Exp Paradigm: Two photon microscopy over 2 days
 Two-photon microscopy
 8 weeks
Dendritic architecture: spine density1
Abnormal
Description: Decreased spine elimination, increase in stability, and no difference in formation rates
Exp Paradigm: Two photon microscopy over 2 days
 Two-photon microscopy
 P20-p30
Social interaction1
Decreased
Description: Decreased social novelty recognition indicated by no preference for close interactions with either stranger 1 or stranger 2 mouse
Exp Paradigm: Social novelty recognition testing
 Three-chamber social approach test
 3-4 weeks
Social interaction1
Decreased
Description: Decreased social behavior indicated by more time spent in compartment and in close proximity with empty cup
Exp Paradigm: Three-chamber social arena
 Three-chamber social approach test
 3-4 weeks
Repetitive digging1
 No change
 Marble-burying test
 3-4 weeks
Olfaction1
 No change
 Olfactory habituation-dishabituation test
 3-4 weeks
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Seizure

M_PAFAH1B1_2_CKO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Dendritic architecture: spine density1
Decreased
Description: Decreased spine density on secondary and tertiary branches
Exp Paradigm: Golgi-cox staining of ca1 pyramidal neurons
 Golgi-cox staining
 Unreported
Social interaction1
Decreased
Description: Decreaesd social novelty recognition indicated by similar amounts of time in both compartments and interaction zones
Exp Paradigm: Three-chamber social arena
 Three-chamber social approach test
 3-4 weeks
Dendritic architecture: spine density1
 No change
 Golgi-cox staining
 Unreported
Social interaction1
 No change
 Three-chamber social approach test
 3-4 weeks
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
CHD8 chromodomain helicase DNA binding protein 8 57680 Q9HCK8 CHIP-seq
Cotney J , et al. 2015
DISC1 disrupted in schizophrenia 1 27185 Q9NRI5 Y2H
Camargo LM , et al. 2006
MSN moesin 4478 P26038 AP-MS
Kristensen AR , et al. 2012
NDEL1 nudE nuclear distribution E homolog (A. nidulans)-like 1 81565 Q9GZM8 IP; LC-MS/MS
Huttlin EL , et al. 2015
NINL ninein-like 22981 Q9Y2I6 EPASIS
Dona M , et al. 2015
PAFAH1B3 platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) 5050 Q15102 IP; LC-MS/MS
Huttlin EL , et al. 2015
Actn2 actinin alpha 2 291245 D3ZCV0 IP; LC-MS/MS
Kuijpers M , et al. 2016
Capzb capping actin protein of muscle Z-line beta subunit 298584 Q5XI32 IP; LC-MS/MS
Kuijpers M , et al. 2016
Dync1h1 dynein cytoplasmic 1 heavy chain 1 29489 P38650 IP; LC-MS/MS
Kuijpers M , et al. 2016
Dync1i2 dynein cytoplasmic 1 intermediate chain 2 116659 Q62871 IP; LC-MS/MS
Kuijpers M , et al. 2016
Dync1li2 dynein, cytoplasmic 1 light intermediate chain 2 81655 Q62698 IP; LC-MS/MS
Kuijpers M , et al. 2016
Ndel1 nudE neurodevelopment protein 1-like 1 170845 Q78PB6 IP; LC-MS/MS
Kuijpers M , et al. 2016
Dync1h1 dynein cytoplasmic 1 heavy chain 1 29489 P38650 in vitro binding assay
McKenney RJ , et al. 2010
Nde1 nuclear distribution gene E homolog 1 (A nidulans) 67203 Q9CZA6 in vitro binding assay; Co-localization
McKenney RJ , et al. 2010

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