HELP     Sign In
Search

Relevance to Autism

A recurrent de novo missense variant in the PACS2 gene (p.Glu209Lys) was identified in 14 unrelated individuals presenting with neonatal-onset developmental and epileptic encephalopathy (Olson et al., 2018); in addition to recurrent phenotypes such as epilepsy and developmental delay/intellectual disability, three cases in this report presented with autism spectrum disorder/autistic disorder, and six cases presented with stereotypies. A de novo probably damaging missense variant in the PACS2 gene was observed in an ASD proband from the Simons Simplex Collection in Iossifov et al., 2014.

Molecular Function

Multifunctional sorting protein that controls the endoplasmic reticulum (ER)-mitochondria communication, including the apposition of mitochondria with the ER and ER homeostasis. In addition, in response to apoptotic inducer, translocates BIB to mitochondria, which initiates a sequence of events including the formation of mitochondrial truncated BID, the release of cytochrome c, the activation of caspase-3 thereby causing cell death. May also be involved in ion channel trafficking, directing acidic cluster-containing ion channels to distinct subcellular compartments.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
A Recurrent De Novo PACS2 Heterozygous Missense Variant Causes Neonatal-Onset Developmental Epileptic Encephalopathy, Facial Dysmorphism, and Cereb...
DD, ID, epilepsy/seizures
ASD, stereotypies
Support
Variantrecurrence in neurodevelopmental disorders: the use of publicly available genomic data identifies clinically relevant pathogenic missense v...
DD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
DD, ID, epilepsy/seizures
Support
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
Support
Increased diagnostic and new genes identification outcome using research reanalysis of singleton exome sequencing.
ID, epilepsy/seizures
Support
Lessons Learned from Large-Scale, First-Tier Clinical Exome Sequencing in a Highly Consanguineous Population.
ASD, epilepsy/seizures
Speech delay
Support
ASD, DD, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1012R001 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R002 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R003 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
 Simplex 
 GEN1012R004 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R005 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R006 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R007 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R008 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R009 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R010 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R011 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R012 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R013 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
 Simplex 
 GEN1012R014 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
 Simplex 
 GEN1012R015 
 missense_variant 
 c.910G>A 
 p.Asp304Asn 
 De novo 
  
 Simplex 
 GEN1012R016 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R017 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R018 
 missense_variant 
 c.566G>A 
 p.Gly189Asp 
 De novo 
  
 Unknown 
 GEN1012R019 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R020 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1012R021 
 missense_variant 
 c.415A>C 
 p.Met139Leu 
 De novo 
  
  
 GEN1012R022 
 missense_variant 
 c.574G>C 
 p.Ala192Pro 
 De novo 
  
  
 GEN1012R023 
 frameshift_variant 
 c.1151del 
 p.Pro384LeufsTer55 
 Unknown 
  
  
 GEN1012R024 
 missense_variant 
 c.1822C>T 
 p.Arg608Cys 
 Familial 
 Maternal 
  
 GEN1012R025 
 missense_variant 
 c.392C>T 
 p.Thr131Met 
 Unknown 
  
  
 GEN1012R026 
 missense_variant 
 c.2369C>A 
 p.Thr790Lys 
 Unknown 
  
  
 GEN1012R027 
 missense_variant 
 c.2369C>T 
 p.Thr790Met 
 Unknown 
  
  
 GEN1012R028 
 missense_variant 
 c.500C>T 
 p.Ala167Val 
 Unknown 
  
  
 GEN1012R029 
 missense_variant 
 c.500C>T 
 p.Ala167Val 
 Unknown 
  
  
 GEN1012R030 
 splice_site_variant 
 c.2120-1G>A 
  
 Unknown 
  
  
 GEN1012R031 
 splice_site_variant 
 c.2120-1G>A 
  
 Unknown 
  
  
 GEN1012R032 
 missense_variant 
 c.2623G>A 
 p.Asp875Asn 
 Unknown 
  
  
 GEN1012R033 
 missense_variant 
 c.2035C>T 
 p.Pro679Ser 
 Unknown 
  
  
 GEN1012R034 
 missense_variant 
 c.2035C>T 
 p.Pro679Ser 
 Unknown 
  
  
 GEN1012R035 
 missense_variant 
 c.2633T>C 
 p.Phe878Ser 
 Unknown 
  
  
 GEN1012R036 
 missense_variant 
 c.193G>A 
 p.Ala65Thr 
 Unknown 
  
  
 GEN1012R037 
 missense_variant 
 c.193G>A 
 p.Ala65Thr 
 Unknown 
  
  
 GEN1012R038 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 Unknown 
 Not paternal 
  
 GEN1012R039 
 missense_variant 
 c.424G>A 
 p.Val142Met 
 De novo 
  
 Simplex 
 GEN1012R040 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 Unknown 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
14
Duplication
 1
 
14
Duplication
 1
 
14
Duplication
 2
 
14
Duplication
 1
 
14
Duplication
 1
 
14
Deletion
 4
 
14
Deletion-Duplication
 4
 
14
Deletion
 3
 
14
Deletion-Duplication
 31
 

No Animal Model Data Available

No PIN Data Available
HELP
Copyright © 2017 MindSpec, Inc.