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Relevance to Autism

Three de novo missense variants in the P4HA2 gene have been identified in simplex ASD cases, with no de novo events in this gene observed in 1,786 unaffected siblings from the Simons Simplex Collection (P=1.21 x 10-4) (De Rubeis et al., 2014; Iossifov et al., 2014; Krumm et al., 2015).

Molecular Function

This gene encodes a component of prolyl 4-hydroxylase, a key enzyme in collagen synthesis that catalyzes the formation of 4-hydroxyproline that is essential to the proper three-dimensional folding of newly synthesized procollagen chains.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Excess of rare, inherited truncating mutations in autism.
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN723R001 
 missense_variant 
 c.1262A>G 
 p.Tyr421Cys 
 De novo 
  
 Simplex 
 GEN723R002 
 missense_variant 
 c.1048A>T 
 p.Ile350Phe 
 De novo 
  
 Simplex 
 GEN723R003 
 missense_variant 
 c.458G>A 
 p.Gly153Glu 
 De novo 
  
 Simplex 
 GEN723R004 
 missense_variant 
 c.1382C>G 
 p.Ala463Gly 
 Familial 
 Maternal 
  
 GEN723R005 
 missense_variant 
 c.359G>A 
 p.Arg120Gln 
 Familial 
 Maternal 
  
 GEN723R006 
 splice_site_variant 
 c.1365+1G>C 
 p.? 
 Familial 
 Maternal 
  
 GEN723R007 
 splice_site_variant 
 c.1365+1G>C 
 p.? 
 Familial 
 Maternal 
  
 GEN723R008 
 stop_gained 
 c.1327A>T 
 p.Lys443Ter 
 Familial 
 Maternal 
  
 GEN723R009 
 missense_variant 
 c.359G>A 
 p.Arg120Gln 
 Unknown 
 Not maternal 
  
 GEN723R010 
 stop_gained 
 c.1189C>T 
 p.Arg397Ter 
 Unknown 
 Not maternal 
  
 GEN723R011 
 missense_variant 
 c.1382C>G 
 p.Ala463Gly 
 Familial 
 Paternal 
  
 GEN723R012 
 missense_variant 
 c.871G>A 
 p.Glu291Lys 
 Familial 
 Paternal 
  
 GEN723R013 
 missense_variant 
 c.871G>A 
 p.Glu291Lys 
 Familial 
 Paternal 
  
 GEN723R014 
 stop_gained 
 c.1273G>T 
 p.Gly425Ter 
 Familial 
 Paternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
5
Duplication
 1
 
5
Deletion
 1
 
5
Deletion
 1
 
5
Deletion
 2
 
5
Duplication
 1
 
5
Deletion-Duplication
 9
 

No Animal Model Data Available

 

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