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Relevance to Autism

In OTX1, rs2018650 and rs13000344 were associated with autism in ASD-CARC cohorts (P(FDR)=8.65 x 10(-7) and 6.07 x 10(5), respectively), AGRE cohort (P(FDR)=0.0034 and 0.015, respectively) and the combined families (P(FDR)=2.34 x 10(-9) and 0.00017, respectively); associations were marginal or insignificant in the New York and SIRFA cohorts. These results indicate that deletion 2p15-p16.1 is not commonly associated with idiopathic ASD, but represents a novel contiguous gene syndrome associated with a constellation of phenotypic features (autism, intellectual disability, craniofacial/CNS dysmorphology), and that OXT1 may contribute to ASD in 2p15-p16.1 deletion cases and non-deletion cases of ASD mapping to this chromosome region.

Molecular Function

This gene encodes a member of the bicoid sub-family of homeodomain-containing transcription factors. The encoded protein acts as a transcription factor and may play a role in brain and sensory organ development. A similar protein in mouse is required for proper brain and sensory organ development and can cause epilepsy.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
2p15-p16.1 microdeletion syndrome: molecular characterization and association of the OTX1 and XPO1 genes with autism spectrum disorders.
ASD
Highly Cited
Epilepsy and brain abnormalities in mice lacking the Otx1 gene.
Highly Cited
Otx1 and Otx2 define layers and regions in developing cerebral cortex and cerebellum.

Rare

No Rare Variants Available

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN376C001 
 intergenic_variant 
 rs2018650 
 c.*89T>C 
  
 Three North American ASD cohorts (ASD-CARC, New York, and AGRE) and one Italian ASD cohort (SIRFA) 
 Discovery 
 GEN376C002 
 intergenic_variant 
 rs2018650 
 c.*89T>C 
  
 Three North American ASD cohorts (ASD-CARC, New York, and AGRE) and one Italian ASD cohort (SIRFA) 
 Replication 
 GEN376C003 
 intergenic_variant 
 rs13000344 
  
  
 Three North American ASD cohorts (ASD-CARC, New York, and AGRE) and one Italian ASD cohort (SIRFA) 
 Discovery 
 GEN376C004 
 intergenic_variant 
 rs13000344 
  
  
 Three North American ASD cohorts (ASD-CARC, New York, and AGRE) and one Italian ASD cohort (SIRFA) 
 Replication 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Deletion-Duplication
 18
 
2
Deletion
 1
 
2
Deletion
 10
 

No Animal Model Data Available

No PIN Data Available
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