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Relevance to Autism

Two de novo variants (one nonsense, one missense) in the NUAK1 gene were identified in ASD probands from the Simons Simplex Collection in Iossifov et al., 2012 and Iossifov et al., 2014. Krumm et al., 2015 reported that no de novo SNVs in this gene were observed in SSC unaffected siblings (de novo SNV P-value <0.05), and no rare effect types were reported in the Exome Variant Server.

Molecular Function

This gene encodes a serine/threonine-protein kinase involved in various processes such as cell adhesion, regulation of cell ploidy and senescence, cell proliferation and tumor progression.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
De novo gene disruptions in children on the autistic spectrum.
ASD
Support
Haploinsufficiency of autism spectrum disorder candidate gene NUAK1 impairs cortical development and behavior in mice.
ASD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Excess of rare, inherited truncating mutations in autism.
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Recent Recommendation
Systems genetics identifies a convergent gene network for cognition and neurodevelopmental disease.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN756R001 
 stop_gained 
 c.1297C>T 
 p.Gln433Ter 
 De novo 
  
 Simplex 
 GEN756R002 
 missense_variant 
 c.1958C>T 
 p.Ala653Val 
 De novo 
  
 Simplex 
 GEN756R003 
 missense_variant 
 c.481C>G 
 p.Gln161Glu 
 Familial 
 Maternal 
  
 GEN756R004 
 missense_variant 
 c.1958C>T 
 p.Ala653Val 
 Familial 
 Paternal 
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Duplication
 1
 
12
Deletion
 1
 
12
Deletion-Duplication
 9
 
12
Deletion
 1
 

Model Summary

Loss of one allele of Nuak1 in neurons of mice leads to abnormal cortical development and connectivity, deficits in spatial memory consolidation, abnormal sensorimotor gating, deficits in social memory but no change in social approach. Reinstatement of Nuak1 expression in neurons rescues deficits in axonal phenotypes.

References

Type
Title
Author, Year
Primary
Haploinsufficiency of autism spectrum disorder candidate gene NUAK1 impairs cortical development and behavior in mice.

M_NUAK1_1_KO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: A lacZ cassette with a neo cassette was inserted just upstream of the translation initiation site followed by a PolyA transcription termination sequence (pA) leading to a consitutive null mutation. Long-term in utero cortical electroporation was performed to label the axons of layer 2/3 pyramidal neurons in the primary somatosensory cortex.
Allele Type: Knockout
Strain of Origin:
Genetic Background: C57Bl/6 J
ES Cell Line:
Mutant ES Cell Line:
Model Source: Riken institute

M_NUAK1_2_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: A lacZ cassette with a neo cassette was inserted just upstream of the translation initiation site followed by a PolyA transcription termination sequence (pA) leading to a consitutive null mutation. Long-term in utero cortical electroporation was performed to label the axons of layer 2/3 pyramidal neurons in the primary somatosensory cortex.
Allele Type: Knockout
Strain of Origin:
Genetic Background: C57Bl/6 J
ES Cell Line:
Mutant ES Cell Line:
Model Source: Riken institute

M_NUAK1_3_KO_HM_MOSAIC

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Mosaic homozygous deletion of exon 2 of the Nuak1 gene by in utero, cortical, electroporation of CAG-cre at E15.5, in widespread cells and tissues of the offspring
Allele Type: Mosaic
Strain of Origin:
Genetic Background: C57Bl/6 J
ES Cell Line:
Mutant ES Cell Line:
Model Source: KOMP Repository from UC Davis

M_NUAK1_3_KO_HT_MOSAIC

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Mosaic heterozygous deletion of exon 2 of the Nuak1 gene by in utero, cortical, electroporation of CAG-cre at E15.5, in widespread cells and tissues of the offspring
Allele Type: Mosaic
Strain of Origin:
Genetic Background: C57Bl/6 J
ES Cell Line:
Mutant ES Cell Line:
Model Source: KOMP Repository from UC Davis

M_NUAK1_5_CKO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Conditional heterozygous deletion of exon 2 of the Nuak1 gene using Nex-cre, in the neurons of the dorsal telencephalon, authors note that NEX-cre is expressed expression in intermediate progenitors and in PNs of the dorsal telencephalon, excluding GABAergic interneurons and astrocytes or other non-neuronal cells.
Allele Type: Conditional loss-of-function
Strain of Origin:
Genetic Background: C57Bl/6 J
ES Cell Line:
Mutant ES Cell Line:
Model Source: KOMP Repository from UC Davis

M_NUAK1_6_CKO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Conditional deletion of exon 2 of the Nuak1 gene using Nex-cre, in the neurons of the dorsal telencephalon, authors note that Nex-cre is expressed in intermediate progenitors and in pyramidal neurons of the dorsal telencephalon, excluding GABAergic interneurons and astrocytes or other non-neuronal cells.
Allele Type: Conditional loss-of-function
Strain of Origin: null
Genetic Background: null
ES Cell Line: null
Mutant ES Cell Line: null
Model Source: null

M_NUAK1_1_KO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Size of cerebral ventricles: lateral ventricle1
Increased
Description: Het mutants show increase in the size of the lateral ventricles compared with controls.
Exp Paradigm: NA
 Stereology
 3 weeks, 1.4 months
Size of cerebral ventricles1
Increased
Description: Het mutants show increase in ventricular size compared with controls.
Exp Paradigm: NA
 Stereology
 3 weeks, 1.4 months
Cortical thickness1
Decreased
Description: Het mutants show decrease in cortical thickness compared with controls.
Exp Paradigm: NA
 Stereology
 3 weeks, 1.4 months
Anatomical projections and connectivity1
Decreased
Description: Het mutants show decrease in terminal axon branching on the contralateral hemisphere compared with controls.
Exp Paradigm: NA
 Immunohistochemistry
 3 weeks, 3months
Repetitive digging1
Increased
Description: Het mutants show increased digging compared with controls.
Exp Paradigm: NA
 Home cage behavior
 Adult
Startle response: acoustic stimulus1
Increased
Description: Het mutants show reduction in ppi compared with controls, more pronounced in males than females.
Exp Paradigm: NA
 Prepulse inhibition
 Adult
Sensorimotor gating1
Decreased
Description: Het mutants show increased startle response compared with controls, more pronounced in males than females.
Exp Paradigm: NA
 Acoustic startle reflex test
 Adult
Social memory1
Decreased
Description: Het mutants displayed no preference between the familiar and the novel mouse compared with controls.
Exp Paradigm: NA
 Three-chamber social approach test
 Adult
Size/growth1
Decreased
Description: Het mutants show decrease in body weight and size at p26 and p40 but not at p18, compared with controls, more pronounced in males than females.
Exp Paradigm: NA
 Body weight measurement
 P18, p26, 1.4 months
Spatial reference memory1
Decreased
Description: Het mutants show no change in preference for the target quadrant during the probe trial compared with controls, immediately following training. however het mutants show decrease in time spent in the target quadrant one month after training compared with controls.
Exp Paradigm: NA
 Barnes maze test
 Adult
Cued or contextual fear conditioning: memory of cue1
Decreased
Description: Het mutants show decrease in response to memory of the cue of the fear conditioning test compared with controls.
Exp Paradigm: NA
 Fear conditioning test
 Adult
Developmental trajectory1
 No change
 General observations
 P0
Mortality/lethality1
 No change
 General observations
 Adult
Anxiety1
 No change
 Open field test
 Adult
Cued or contextual fear conditioning: memory of context1
 No change
 Fear conditioning test
 Adult
Object recognition memory1
 No change
 Novel object recognition test
 Adult
Spatial working memory1
 No change
 Barnes maze test
 Adult
General locomotor activity1
 No change
 Open field test
 Adult
Self grooming: home cage/familiar environment1
 No change
 Home cage behavior
 Adult
Axonal architecture: axonal branch number1
 No change
 Immunohistochemistry
 3 weeks, 3months
Cell proliferation: neural precursors1
 No change
 Immunostaining
 E18.5
Cortical lamination1
 No change
 Immunostaining
 E18.5
Hippocampal morphology1
 No change
 Stereology
 3 weeks
Morphology of the basal ganglia: striatum: caudoputamen1
 No change
 Stereology
 3 weeks
Neuronal differentiation1
 No change
 NA
 1.4 months
Neuronal migration1
 No change
 Immunostaining
 E18.5
Neuronal morphology: axonal structure1
 No change
 Immunohistochemistry
 3 weeks
Neuronal morphology: axonal structure1
 No change
 Immunostaining
 E18.5
Digestive system function: gastrointestinal motility1
 No change
 Open field test
 Adult
Reproductive function1
 No change
 General observations
 Adult
Self grooming: perseveration1
 No change
 Open field test
 Adult
Self scratching1
 No change
 Home cage behavior
 Adult
Olfaction1
 No change
 Olfactory habituation-dishabituation test
 Adult
Pain or nociception1
 No change
 Fear conditioning test
 Adult
Vision1
 No change
 Optomotor response to dark flash pulses
 Adult
Rearing behavior1
 No change
 Open field test
 Adult
Social approach1
 No change
 Three-chamber social approach test
 Adult
 Not Reported: Circadian sleep/wake cycle, Communications, Immune response, Maternal behavior, Molecular profile, Neurophysiology, Physiological parameters, Seizure

M_NUAK1_2_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Cell proliferation: neural precursors1
 No change
 Immunostaining
 E18.5
Cortical lamination1
 No change
 Immunostaining
 E18.5
Neuronal migration1
 No change
 Immunostaining
 E18.5
Neuronal morphology: axonal structure1
 No change
 Immunostaining
 E18.5
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_NUAK1_3_KO_HM_MOSAIC

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Anatomical projections and connectivity1
Decreased
Description: Mutants with conditional cortical null deletion of nuak1 show decrease in terminal axon branching on the contralateral hemisphere layer ii/iii neurons compared with controls, indicating a role for nuak1 in cortico-cortical connectivity during postnatal development.
Exp Paradigm: NA
 Immunohistochemistry
 3 weeks
Axonal architecture: axonal branch number1
 No change
 Immunohistochemistry
 3 weeks
Cell proliferation: neural precursors1
 No change
 Immunohistochemistry
 3 weeks
Neuronal migration1
 No change
 Immunostaining
 E18.5
Neuronal morphology: axonal structure1
 No change
 Immunohistochemistry
 3 weeks
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_NUAK1_3_KO_HT_MOSAIC

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Anatomical projections and connectivity1
Decreased
Description: Het mutants with conditional cortical deletion of nuak1 show decrease in terminal axon branching on the contralateral hemisphere layer ii/iii neurons compared with controls, indicating a role for nuak1 in cortico-cortical connectivity during postnatal development.
Exp Paradigm: NA
 Immunohistochemistry
 3 weeks
Axonal architecture: axonal branch number1
 No change
 Immunohistochemistry
 3 weeks
Cell proliferation: neural precursors1
 No change
 Immunohistochemistry
 3 weeks
Neuronal migration1
 No change
 Immunostaining
 3 weeks
Neuronal morphology: axonal structure1
 No change
 Immunohistochemistry
 3 weeks
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_NUAK1_5_CKO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Social memory1
Decreased
Description: Het mutants with conditional deletion of nuak1 in the telencephalon displayed no preference for the novel mouse compared with controls.
Exp Paradigm: NA
 Three-chamber social approach test
 Adult
Cued or contextual fear conditioning: memory of cue1
Decreased
Description: Het mutants with conditional deletion of nuak1 in the telencephalon show decrease in response to memory of the cue of the fear conditioning test compared with controls.
Exp Paradigm: NA
 Fear conditioning test
 Adult
Mortality/lethality1
 No change
 Survival analysis
 P0
Size/growth1
 No change
 Body weight measurement
 3 weeks - 3.4 months
Cued or contextual fear conditioning: memory of context1
 No change
 Fear conditioning test
 Adult
Object recognition memory1
 No change
 Novel object recognition test
 Adult
Pain or nociception1
 No change
 Fear conditioning test
 Adult
Social approach1
 No change
 Three-chamber social approach test
 Adult
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure

M_NUAK1_6_CKO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Social memory1
Decreased
Description: Mutants with conditional deletion of nuak1 in the telencephalon displayed no preference for the novel mouse compared with controls.
Exp Paradigm: NA
 Three-chamber social approach test
 Adult
Cued or contextual fear conditioning: memory of cue1
Decreased
Description: Mutants with conditional deletion of nuak1 in the telencephalon show decrease in response to memory of the cue of the fear conditioning test compared with controls.
Exp Paradigm: NA
 Fear conditioning test
 Adult
Mortality/lethality1
 No change
 Survival analysis
 P0
Size/growth1
 No change
 Body weight measurement
 3 weeks - 3.4 months
Cued or contextual fear conditioning: memory of context1
 No change
 Fear conditioning test
 Adult
Object recognition memory1
 No change
 Novel object recognition test
 Adult
Pain or nociception1
 No change
 Fear conditioning test
 Adult
Social approach1
 No change
 Three-chamber social approach test
 Adult
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure

 

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