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Relevance to Autism

A recurrent de novo missense variant in the NTRK2 gene (;p.Tyr434Cys) was identified in four individuals presenting with epilepsy and developmental delay/intellectual disability; two of these individuals were also diagnosed with ASD (Hamdan et al., 2017). An fifth individual found to have a de novo NTRK2 missense variant (p.Thr720Ile) was also reported in Hamdan et al., 2017; this case was diagnosed with ASD and presented with epilepsy, global developmental delay, and intellectual disability.

Molecular Function

This gene encodes a member of the neurotrophic tyrosine receptor kinase (NTRK) family. This kinase is a membrane-bound receptor that, upon neurotrophin binding, phosphorylates itself and members of the MAPK pathway. Signalling through this kinase leads to cell differentiation. Mutations in this gene are associated with obesity, hyperphagia, and developmental delay (OBHD; OMIM 613886); affected individuals have been reported to display stereotyped behaviors and repetitive speech (Yeo et al., 2004) and ritualized behaviors (Miller et al., 2017).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
High Rate of Recurrent De Novo Mutations in Developmental and Epileptic Encephalopathies.
Epilepsy/seizures
DD, ID, ASD
Support
Functional characterization and potential therapeutic avenues for variants in the NTRK2 gene causing developmental and epileptic encephalopathies
Developmental and epileptic encephalopathy 58
ASD
Support
Upregulation versus loss of function of NTRK2 in 44 affected individuals leads to 2 distinct neurodevelopmental disorders
DEE58, OBHD, DD, ID
ASD, epilepsy/seizures
Support
NTRK2-related developmental and epileptic encephalopathy: Report of 5 new cases
DD, epilepsy/seizures
Autistic features
Support
Genomic insights from a deeply phenotyped highly consanguineous neurodevelopmental disorders cohort
ASD, DD
Support
Diagnostic value of exome and whole genome sequencing in craniosynostosis.
Obesity, hyperphagia, and developmental delay (OBH
Ritualized behaviors
Support
Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism
ASD
Support
A de novo mutation affecting human TrkB associated with severe obesity and developmental delay.
Obesity, hyperphagia, and developmental delay (OBH
Stereotyped behaviors, repetitive speech
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Analysis of recent shared ancestry in a familial cohort identifies coding and noncoding autism spectrum disorder variants
ASD
DD
Support
Rare Variant Burden and Behavioral Phenotypes in Children with Autism in Slovakia
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN986R001 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 De novo 
  
 Simplex 
 GEN986R002 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 De novo 
  
  
 GEN986R003 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 De novo 
  
  
 GEN986R004 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 De novo 
  
  
 GEN986R005 
 missense_variant 
 c.2159C>T 
 p.Thr720Ile 
 De novo 
  
 Simplex 
 GEN986R006 
 missense_variant 
 c.2165A>G 
 p.Tyr722Cys 
 De novo 
  
 Simplex 
 GEN986R007 
 missense_variant 
 c.220G>A 
 p.Ala74Thr 
 Unknown 
  
  
 GEN986R008 
 missense_variant 
 c.292A>G 
 p.Ile98Val 
 Unknown 
  
  
 GEN986R009 
 missense_variant 
 c.1060A>G 
 p.Met354Val 
 Unknown 
  
  
 GEN986R010 
 missense_variant 
 c.1979C>T 
 p.Pro660Leu 
 Unknown 
  
  
 GEN986R011 
 missense_variant 
 c.2413_2414delinsCT 
 p.Thr805Leu 
 Unknown 
  
  
 GEN986R012 
 stop_gained 
 c.1330G>T 
 p.Gly444Ter 
 Unknown 
 Not maternal 
  
 GEN986R013 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 De novo 
  
  
 GEN986R014 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 Unknown 
  
 Simplex 
 GEN986R015 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 Unknown 
  
 Simplex 
 GEN986R016 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 Unknown 
  
 Simplex 
 GEN986R017 
 missense_variant 
 c.1652G>A 
 p.Arg551Gln 
 De novo 
  
  
 GEN986R018a 
 intergenic_variant 
  
  
 Familial 
 Both parents 
 Simplex 
 GEN986R019 
 missense_variant 
 c.1882C>A 
 p.Pro628Thr 
 Unknown 
  
  
 GEN986R020 
 missense_variant 
 c.694G>T 
 p.Val232Phe 
 De novo 
  
 Simplex 
 GEN986R021 
 missense_variant 
 c.1529C>T 
 p.Ser510Leu 
 De novo 
  
 Simplex 
 GEN986R022 
 synonymous_variant 
 c.1887C>T 
 p.Leu629= 
 De novo 
  
 Multiplex 
 GEN986R023 
 missense_variant 
 c.1555A>G 
 p.Ile519Val 
 De novo 
  
  
 GEN986R024 
 missense_variant 
 c.2234G>A 
 p.Arg745Gln 
 De novo 
  
  
 GEN986R025 
 frameshift_variant 
 c.970_986del 
 p.Leu324HisfsTer4 
 Unknown 
  
  
 GEN986R026 
 splice_site_variant 
 c.213-2A>G 
 p.? 
 Familial 
 Paternal 
  
 GEN986R027 
 splice_region_variant 
 c.287+3G>C 
 p.Ile71_Leu96delinsMet 
 De novo 
  
 Simplex 
 GEN986R028 
 missense_variant 
 c.302C>A 
 p.Ser101Tyr 
 De novo 
  
 Simplex 
 GEN986R029 
 missense_variant 
 c.986A>G 
 p.Tyr329Cys 
 De novo 
  
 Simplex 
 GEN986R030 
 missense_variant 
 c.1279G>T 
 p.Gly427Cys 
 De novo 
  
 Simplex 
 GEN986R031 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 De novo 
  
 Simplex 
 GEN986R032 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 De novo 
  
 Simplex 
 GEN986R033 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 De novo 
  
 Simplex 
 GEN986R034 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 De novo 
  
 Simplex 
 GEN986R035 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 Unknown 
 Not maternal 
  
 GEN986R036 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 Unknown 
  
  
 GEN986R037 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 Unknown 
  
  
 GEN986R038 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 Unknown 
  
  
 GEN986R039 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 Unknown 
  
  
 GEN986R040 
 missense_variant 
 c.1301A>G 
 p.Tyr434Cys 
 Unknown 
  
  
 GEN986R041 
 missense_variant 
 c.1438G>A 
 p.Gly480Ser 
 De novo 
  
 Simplex 
 GEN986R042 
 splice_region_variant 
 c.1634-3C>G 
 p.? 
 Unknown 
  
  
 GEN986R043 
 stop_gained 
 c.1651C>T 
 p.Arg551Ter 
 Unknown 
  
  
 GEN986R044 
 missense_variant 
 c.1922T>G 
 p.Leu641Arg 
 De novo 
  
 Simplex 
 GEN986R045 
 missense_variant 
 c.2065G>A 
 p.Val689Met 
 Unknown 
 Not maternal 
 Multiplex 
 GEN986R046 
 missense_variant 
 c.2143C>T 
 p.Arg715Trp 
 De novo 
  
 Simplex 
 GEN986R047 
 missense_variant 
 c.2164T>G 
 p.Tyr722Asp 
 De novo 
  
 Simplex 
 GEN986R048 
 missense_variant 
 c.2168A>C 
 p.Tyr723Ser 
 De novo 
  
 Simplex 
 GEN986R049 
 missense_variant 
 c.2404A>T 
 p.Met802Leu 
 De novo 
  
 Simplex 
 GEN986R050 
 missense_variant 
 c.2188A>G 
 p.Met730Val 
 Unknown 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
9
Duplication
 1
 
9
Deletion-Duplication
 7
 

No Animal Model Data Available

 

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