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Relevance to Autism

Recurrent mutations in the NRXN1 gene have been identified in individuals with ASD as described below. Numerous studies have demonstrated a statistically significant enrichment of NRXN1 deletions in ASD cases compared to controls [10 in 2195 cases vs. none in 2519 controls (permuted P-value 0.002) in Glessner et al., 2009; 9 in 1771 cases vs. none in 2539 controls (P-value 3.3 E-04) in Bucan et al., 2009; an excess of exonic NRNX1 CNVs in 996 cases compared to 4,964 controls ((P-value 7.7E-4) in Pinto et al., 2010; 7 exonic deletions in 2,588 cases vs. 1 in 2,670 controls (P-value 0.032) in Girirajan et al., 2013]. A similar enrichment of NRXN1 deletions have been repeatedly observed in cohorts composed of cases with a spectrum of neurodevelopmental disorders, including ASD [9 exonic NRXN1 deletions in 3,540 cases vs. 10 in 51,939 controls (P-value 8.9E-07) in Ching et al., 2010; exonic NRXN1 deletions observed in 0.11% of cases compared to 0.02% of controls (P-value 6.08E-07) in Dabell et al., 2013; NRXN1 deletions in 30 cases vs. 9 controls (simulated P-value of 0.00005) in Coe et al., 2014; P<0.0001 in 19,263 cases and 15,264 controls in Lowther et al., 2016]. Multiple studies have also reported point mutations in NRXN1 in individuals with ASD (Feng et al., 17034946; Kim et al., 2008; Yan et al., 2008; Duong et al., 2012; Liu et al., 2012; Camacho-Garcia et al., 2012), including de novo loss-of-function variants in two probands from simplex families (Iossifov et al., 2012; Stessman et al., 2017). Biallelic mutations in NRXN1 have also been implicated in Pitt-Hopkins-like syndrome 2, an autosomal recessive intellectual disability syndrome (Zweier et al., 2009; Harrison et al., 2011). A polymorphism located in the 3' UTR of NRXN1 was found to influence white matter volume and sensorimotor function in a cohort of healthy individuals in Voineskos et al., 2011 (PMID 21687627).

Molecular Function

Neurexins function in the vertebrate nervous system as cell adhesion molecules and receptors. Two neurexin genes are among the largest known in human (NRXN1 and NRXN3). By using alternate promoters, splice sites and exons, predictions of hundreds or even thousands of distinct mRNAs have been made.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
High frequency of neurexin 1beta signal peptide structural variants in patients with autism.
ASD
Positive Association
Mapping autism risk loci using genetic linkage and chromosomal rearrangements.
ASD
Positive Association
Mutation analysis of the NRXN1 gene in a Chinese autism cohort.
ASD
Positive Association
Deletions of NRXN1 (neurexin-1) predispose to a wide spectrum of developmental disorders.
ASD
Positive Association
Neurexin 1alpha structural variants associated with autism.
ASD
Positive Association
Disruption of neurexin 1 associated with autism spectrum disorder.
ASD
Support
Recurrent de novo mutations implicate novel genes underlying simplex autism risk.
ASD
Support
Rare NRXN1 missense variants identified in autism interfered protein degradation and Drosophila sleeping
ASD
Support
Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder.
ASD
Support
Increased Ca2+ signaling in NRXN1 +/- neurons derived from ASD induced pluripotent stem cells.
ASD
Support
CNTNAP2 and NRXN1 are mutated in autosomal-recessive Pitt-Hopkins-like mental retardation and determine the level of a common synaptic protein in D...
Pitt-Hopkins-like syndrome 2
ID, epilepsy
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Identification of candidate intergenic risk loci in autism spectrum disorder.
ASD
Support
Functional characterization of rare NRXN1 variants identified in autism spectrum disorders and schizophrenia
ASD, SCZ
Support
Mutations affecting synaptic levels of neurexin-1 in autism and mental retardation.
ASD
ID
Support
Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder.
ASD
Support
Schizophrenia
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Social behavior in prepubertal neurexin 1α deficient rats: A model of neurodevelopmental disorders
ASD
Support
Exon-disrupting deletions of NRXN1 in idiopathic generalized epilepsy.
Epilepsy
ID
Support
Impact of on-site clinical genetics consultations on diagnostic rate in children and young adults with autism spectrum disorder.
ASD
Support
Recurrent CNVs disrupt three candidate genes in schizophrenia patients.
SCZ
Support
Frequency and Complexity of De Novo Structural Mutation in Autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Detection of clinically relevant genetic variants in autism spectrum disorder by whole-genome sequencing.
ASD
Support
Genome-wide detection of tandem DNA repeats that are expanded in autism
ASD
Support
Mutations in NRXN1 in a family multiply affected with brain disorders: NRXN1 mutations and brain disorders.
ASD
MR, Epilepsy
Support
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD
Support
ASD
Support
Refining analyses of copy number variation identifies specific genes associated with developmental delay.
ASD, DD, ID
Support
Cross-platform validation of neurotransmitter release impairments in schizophrenia patient-derived NRXN1-mutant neurons
SCZ
Support
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
NA
ASD, SCZ
Support
Molecular Diagnostic Yield of Chromosomal Microarray Analysis and Whole-Exome Sequencing in Children With Autism Spectrum Disorder.
ASD
Support
Loss of neurexin-1 in Drosophila melanogaster results in altered energy metabolism and increased seizure susceptibility
Support
CNV analysis in Tourette syndrome implicates large genomic rearrangements in COL8A1 and NRXN1.
TS
Support
Further insight into the neurobehavioral pattern of children carrying the 2p16.3 heterozygous deletion involving NRXN1: Report of five new cases
ASD, DD, ID
Epilepsy/seizures
Support
Compound heterozygous deletion of NRXN1 causing severe developmental delay with early onset epilepsy in two sisters.
ID
Epilepsy
Support
Variable phenotype expression in a family segregating microdeletions of the NRXN1 and MBD5 autism spectrum disorder susceptibility genes.
ASD, ADHD, ID
Macrocephaly
Support
ASD
Support
Fraternal twins with autism, severe cognitive deficit, and epilepsy: diagnostic role of chromosomal microarray analysis.
Pitt-Hopkins-like syndrome 2
ASD, ID, epilepsy
Support
Diagnostic yield of whole-exome sequencing in non-syndromic intellectual disability
DD, ID
ADHD
Support
2p16.3 microdeletion with partial deletion of the neurexin-1 gene in a female with developmental delays, short stature, and a congenital diaphragma...
DD
Support
Lessons Learned from Large-Scale, First-Tier Clinical Exome Sequencing in a Highly Consanguineous Population.
Pitt-Hopkins-like syndrome 2, DD, ID, epilepsy/sei
Stereotypies
Support
ASD
Support
A common cognitive, psychiatric, and dysmorphic phenotype in carriers of NRXN1 deletion.
ID
ASD, BPD, ADHD
Support
Altered medial prefrontal cortex and dorsal raphé activity predict genotype and correlate with abnormal learning behavior in a mouse model of autism-associated 2p16.3 deletion
Support
Molecular and clinical characterization of 25 individuals with exonic deletions of NRXN1 and comprehensive review of the literature.
ID, ASD
Epilepsy
Support
Rare genetic susceptibility variants assessment in autism spectrum disorder: detection rate and practical use.
ASD
Support
Truncating mutations in NRXN2 and NRXN1 in autism spectrum disorders and schizophrenia.
SCZ
ASD, ID
Support
Mutation analysis of the NRXN1 gene in autism spectrum disorders.
ASD
Support
Etiological yield of SNP microarrays in idiopathic intellectual disability.
DD, ID
ASD or autistic features, epilepsy
Support
Comprehensive Genetic Analysis of Non-syndromic Autism Spectrum Disorder in Clinical Settings
ASD
Support
Rate of de novo mutations and the importance of father's age to disease risk.
ASD, SCZ
Support
Whole genome paired-end sequencing elucidates functional and phenotypic consequences of balanced chromosomal rearrangement in patients with develop...
ID
Behavioral abnormalities
Support
ASD
DD, ID
Support
Large-scale discovery of novel genetic causes of developmental disorders.
DD
Hypotonia
Support
Autism spectrum disorder and comorbid neurodevelopmental disorders (ASD-NDDs): Clinical and genetic profile of a pediatric cohort
ASD
Epilepsy/seizures
Support
Identification of rare copy number variants in high burden schizophrenia families.
SCZ
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Functional impact of global rare copy number variation in autism spectrum disorders.
ASD
Support
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
ASD
Support
DD, ID
Autistic features
Support
A survey of rare coding variants in candidate genes in schizophrenia by deep sequencing.
SCZ
Support
An increased burden of rare exonic variants in NRXN1 microdeletion carriers is likely to enhance the penetrance for autism spectrum disorder
ASD
DD
Support
Missense mutation in the ATPase, aminophospholipid transporter protein ATP8A2 is associated with cerebellar atrophy and quadrupedal locomotion.
ASD
Support
Both rare and common genetic variants contribute to autism in the Faroe Islands.
ASD
Support
A boy with dysmorphic features, intellectual disability, and biallelic homozygous deletion in NRXN1.
ID
Support
NRXN1α +/- is associated with increased excitability in ASD iPSC-derived neurons
ASD
Support
Investigation of NRXN1 deletions: clinical and molecular characterization.
DD, ID
ASD, ADHD, Epilepsy
Support
The clinical relevance of intragenic NRXN1 deletions.
Support
Intragenic rearrangements in NRXN1 in three families with autism spectrum disorder, developmental delay, and speech delay.
ASD
Support
The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies.
DD
Support
Genome-wide rare variant score associates with morphological subtypes of autism spectrum disorder
ASD
Support
Performance comparison of bench-top next generation sequencers using microdroplet PCR-based enrichment for targeted sequencing in patients with aut...
ASD
ID, epilepsy
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
ID
Support
De novo gene disruptions in children on the autistic spectrum.
ASD
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
ASD
Highly Cited
Binding properties of neuroligin 1 and neurexin 1beta reveal function as heterophilic cell adhesion molecules.
Highly Cited
Neurexin mediates the assembly of presynaptic terminals.
Recent Recommendation
Modeling the functional genomics of autism using human neurons.
Recent Recommendation
Functional impacts of NRXN1 knockdown on neurodevelopment in stem cell models.
Recent Recommendation
Presynaptic targeting of alpha4beta 2 nicotinic acetylcholine receptors is regulated by neurexin-1beta.
Recent Recommendation
A Statistical Framework for Mapping Risk Genes from De Novo Mutations in Whole-Genome-Sequencing Studies.
ASD
Recent Recommendation
Direct measure of the de novo mutation rate in autism and schizophrenia cohorts.
SCZ
Recent Recommendation
Neurexin regulates visual function via mediating retinoid transport to promote rhodopsin maturation.
Recent Recommendation
Disruption of the neurexin 1 gene is associated with schizophrenia.
SCZ
Recent Recommendation
Rare Copy Number Variants in NRXN1 and CNTN6 Increase Risk for Tourette Syndrome.
Tourette syndrome
Recent Recommendation
Splice form dependence of beta-neurexin/neuroligin binding interactions.
Recent Recommendation
Neuroligin-1 induces neurite outgrowth through interaction with neurexin-1 and activation of fibroblast growth factor receptor-1.
Recent Recommendation
A patient with vertebral, cognitive and behavioural abnormalities and a de novo deletion of NRXN1alpha.
ID
Recent Recommendation
Molecular characterization of NRXN1 deletions from 19,263 clinical microarray cases identifies exons important for neurodevelopmental disease expre...
DD, ID, ASD
Recent Recommendation
Trans-synaptic interaction of GluRdelta2 and Neurexin through Cbln1 mediates synapse formation in the cerebellum.
Recent Recommendation
Phenotypic spectrum and genotype-phenotype correlations of NRXN1 exon deletions.
ASD, ID
ADHD, epilepsy
Recent Recommendation
Silencing of neuroligin function by postsynaptic neurexins.
Recent Recommendation
Low load for disruptive mutations in autism genes and their biased transmission.
ASD
Recent Recommendation
Neurexins physically and functionally interact with GABA(A) receptors.
Recent Recommendation
Neuronal impact of patient-specific aberrant NRXN1 splicing.
Recent Recommendation
Expanding the clinical spectrum associated with defects in CNTNAP2 and NRXN1.
ID
Recent Recommendation
Retrograde modulation of presynaptic release probability through signaling mediated by PSD-95-neuroligin.
Recent Recommendation
Neurexin 1 (NRXN1) splice isoform expression during human neocortical development and aging.
Recent Recommendation
Sensory regulation of neuroligins and neurexin I in the honeybee brain.
Recent Recommendation
Phenotypic spectrum of NRXN1 mono- and bi-allelic deficiency: A systematic review.
Pitt-Hopkins-like syndrome 2
Recent Recommendation
Neurexin-1 and frontal lobe white matter: an overlapping intermediate phenotype for schizophrenia and autism spectrum disorders.
ASD
SCZ
Recent Recommendation
Alternative splicing controls selective trans-synaptic interactions of the neuroligin-neurexin complex.
Recent Recommendation
Targeted combinatorial alternative splicing generates brain region-specific repertoires of neurexins.
Recent Recommendation
Mouse neurexin-1alpha deletion causes correlated electrophysiological and behavioral changes consistent with cognitive impairments.
ASD
Recent Recommendation
NRXN1 deletion syndrome; phenotypic and penetrance data from 34 families.
DD, ID
ASD, epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN179R001 
 missense_variant 
 c.41C>T 
 p.Ser14Leu 
 Familial 
 Paternal 
 Multiplex 
 GEN179R002 
 missense_variant 
 c.41C>T 
 p.Ser14Leu 
  
  
  
 GEN179R003 
 missense_variant 
 c.118T>A 
 p.Trp40Arg 
 Familial 
 Maternal 
 Simplex 
 GEN179R004 
 missense_variant 
 c.53T>A 
 p.Leu18Gln 
  
  
  
 GEN179R005 
 synonymous_variant 
 c.105C>A 
 p.Gly35= 
  
  
  
 GEN179R006 
 synonymous_variant 
 c.912C>T 
 p.Gly304= 
  
  
  
 GEN179R007 
 missense_variant 
 c.2242C>A 
 p.Leu748Ile 
  
  
  
 GEN179R008 
 synonymous_variant 
 c.3165C>T 
 p.Ala1055= 
  
  
  
 GEN179R009 
 synonymous_variant 
 c.3975C>T 
 p.Gly1325= 
  
  
  
 GEN179R010 
 synonymous_variant 
 c.4374A>G 
 p.Pro1458= 
  
  
  
 GEN179R011a 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN179R011b 
 stop_gained 
 c.2936C>G 
 p.Ser979Ter 
 Familial 
 Paternal 
 Simplex 
 GEN179R012 
 copy_number_loss 
  
  
 Unknown 
 Not maternal 
 Simplex 
 GEN179R013 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN179R014 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R015 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R016 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN179R017 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN179R018 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R019 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN179R020 
 copy_number_loss 
  
  
 Unknown 
  
 Simplex 
 GEN179R021 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN179R022 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN179R023 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN179R024 
 missense_variant 
 c.23G>C 
 p.Arg8Pro 
 Unknown 
  
 Unknown 
 GEN179R025 
 missense_variant 
 c.37C>T 
 p.Leu13Phe 
 Unknown 
  
 Unknown 
 GEN179R026 
 splice_site_variant 
 c.1025C>T 
 p.Thr342Ile 
 Unknown 
  
 Unknown 
 GEN179R027 
 missense_variant 
 c.83G>C 
 p.Gly28Ala 
 Unknown 
  
 Unknown 
 GEN179R028 
 missense_variant 
 c.1994C>T 
 p.Thr665Ile 
 Unknown 
  
 Unknown 
 GEN179R029 
 missense_variant 
 c.2143G>A 
 p.Glu715Lys 
 Unknown 
  
 Unknown 
 GEN179R030 
 copy_number_loss 
  
  
 De novo 
  
 Multiplex 
 GEN179R031 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R032 
 copy_number_loss 
  
  
  
  
  
 GEN179R033 
 copy_number_loss 
  
  
  
  
  
 GEN179R034 
 copy_number_loss 
  
  
  
  
  
 GEN179R035 
 copy_number_loss 
  
  
  
  
  
 GEN179R036 
 copy_number_loss 
  
  
  
  
  
 GEN179R037 
 copy_number_loss 
  
  
  
  
  
 GEN179R038 
 copy_number_loss 
  
  
  
  
  
 GEN179R039 
 copy_number_loss 
  
  
  
  
  
 GEN179R040 
 copy_number_loss 
  
  
  
  
  
 GEN179R041 
 copy_number_loss 
  
  
  
  
  
 GEN179R042 
 copy_number_loss 
  
  
  
  
  
 GEN179R043 
 copy_number_loss 
  
  
  
  
  
 GEN179R044 
 copy_number_loss 
  
  
  
  
  
 GEN179R045 
 copy_number_loss 
  
  
  
  
  
 GEN179R046 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R047 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R048 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R049 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R050 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R051 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R052 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN179R053 
 splice_site_variant 
 c.2879C>T 
 p.Thr960Ile 
 Familial 
 Paternal 
 Multiplex 
 GEN179R054 
 copy_number_gain 
  
  
 De novo 
  
 Simplex 
 GEN179R055 
 copy_number_loss 
  
  
 De novo 
  
 Unknown 
 GEN179R056 
 copy_number_loss 
  
  
 De novo 
  
 Unknown 
 GEN179R057 
 copy_number_loss 
  
  
 De novo 
  
 Unknown 
 GEN179R058 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R059 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R060 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R061 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R062 
 5_prime_UTR_variant 
 c.-3G>T 
  
 Familial 
  
  
 GEN179R063 
 initiator_codon_variant 
 c.3G>T 
 p.Met1? 
 Familial 
  
  
 GEN179R064 
 missense_variant 
 c.1124G>A 
 p.Arg375Gln 
 Familial 
 Maternal 
 Multiplex 
 GEN179R065 
 missense_variant 
 c.1132G>A 
 p.Gly378Ser 
 Familial 
 Maternal 
 Simplex 
 GEN179R066 
 stop_gained 
 c.2865T>A 
 p.Tyr955Ter 
 De novo 
  
 Simplex 
 GEN179R067 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R068 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R069 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R070 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R071 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R072 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R073 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R074 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R075 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R076 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R077 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN179R078 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R079 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R080 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R081 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN179R082 
 copy_number_loss 
  
  
 Unknown 
 Not maternal 
  
 GEN179R083 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R084 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R085 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R086 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R087 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R088 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R089 
 synonymous_variant 
 c.705C>G 
 p.Ser235= 
 Unknown 
  
  
 GEN179R090 
 missense_variant 
 c.844A>G 
 p.Ile282Val 
 Familial 
 Maternal 
  
 GEN179R091 
 missense_variant 
 c.2677C>G 
 p.Leu893Val 
 Familial 
 Paternal 
  
 GEN179R092 
 missense_variant 
 c.3403A>G 
 p.Ile1135Val 
 Familial 
 Paternal 
  
 GEN179R093 
 synonymous_variant 
 c.81A>G 
 p.(=) 
 Unknown 
  
  
 GEN179R094 
 synonymous_variant 
 c.132C>T 
 p.Pro44= 
 Unknown 
  
  
 GEN179R095 
 missense_variant 
 c.83G>C 
 p.Gly28Ala 
 Unknown 
  
  
 GEN179R096 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN179R097 
 copy_number_gain 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN179R098 
 copy_number_gain 
  
  
 Unknown 
 Not maternal 
 Simplex 
 GEN179R099 
 frameshift_variant 
 ins(ACGG) 
 p.Gly1402AspfsTer29 
 De novo 
  
  
 GEN179R100 
 stop_gained 
 c.337C>T 
 p.Arg113Ter 
 De novo 
  
  
 GEN179R101 
 frameshift_variant 
 c.4146_4147insGTCC 
 p.Met1383ValfsTer20 
 De novo 
  
  
 GEN179R102 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN179R103 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN179R104 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R105 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Unknown 
 GEN179R106 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Unknown 
 GEN179R107 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Unknown 
 GEN179R108 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Unknown 
 GEN179R109 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN179R110 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN179R111 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN179R112 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN179R113 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN179R114 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R115 
 copy_number_loss 
  
  
 De novo 
  
 Multiplex 
 GEN179R116 
 copy_number_loss 
  
  
 De novo 
  
 Multiplex 
 GEN179R117 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN179R118 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN179R119 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN179R120 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN179R121 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R122 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R123 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN179R124 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R125 
 copy_number_loss 
  
  
 Familial 
 Parental 
 Simplex 
 GEN179R126 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN179R127 
 copy_number_loss 
  
  
 De novo 
  
 Multi-generational 
 GEN179R128 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R129 
 copy_number_loss 
  
  
 Apparently de novo 
  
  
 GEN179R130 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R131 
 copy_number_loss 
  
  
 Unknown 
 Not maternal 
  
 GEN179R132 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN179R133 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R134 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN179R135 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R136 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN179R137 
 copy_number_loss 
  
  
 Apparently de novo 
  
  
 GEN179R138 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R139 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R140 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R141 
 copy_number_loss 
  
  
 Unknown 
 Not maternal 
 Multiplex 
 GEN179R142 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R143 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R144 
 copy_number_loss 
  
  
 Unknown 
 Not maternal 
  
 GEN179R145a 
 copy_number_loss 
  
  
 Familial 
 Maternal or paternal 
 Simplex 
 GEN179R145b 
 copy_number_loss 
  
  
 Familial 
 Paternal or maternal 
 Simplex 
 GEN179R146 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R147 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN179R148 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R149 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R150 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN179R151 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN179R152 
 copy_number_loss 
  
  
  
  
  
 GEN179R153 
 copy_number_loss 
  
  
  
  
  
 GEN179R154 
 copy_number_gain 
  
  
  
  
  
 GEN179R155 
 copy_number_loss 
  
  
  
  
  
 GEN179R156 
 copy_number_loss 
  
  
  
  
  
 GEN179R157 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R158 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R159 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R160 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R161 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN179R162 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R163 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R164 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R165 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R166 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R167 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R168 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R169 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R170 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R171 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R172 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R173 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R174 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R175 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R176 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R177 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R178 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R179 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R180 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R181 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R182 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R183 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R184 
 copy_number_loss 
  
  
 De novo 
  
 Multiplex 
 GEN179R185 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R186 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R187 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R188 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R189 
 copy_number_loss 
  
  
 Unknown 
  
 Multiplex 
 GEN179R190 
 copy_number_loss 
  
  
 Unknown 
  
 Multiplex 
 GEN179R191 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R192 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R193 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R194 
 missense_variant 
 c.2653C>T 
 p.His885Tyr 
 Familial 
 Paternal 
 Multiplex 
 GEN179R195 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN179R196 
 copy_number_loss 
  
  
 Unknown 
  
 Simplex 
 GEN179R197 
 copy_number_loss 
  
  
 Unknown 
  
 Simplex 
 GEN179R198 
 copy_number_loss 
  
  
 Unknown 
  
 Simplex 
 GEN179R199 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R200 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R201 
 missense_variant 
 c.455G>A 
 p.Gly152Asp 
 Unknown 
  
 Unknown 
 GEN179R202 
 stop_gained 
 c.972C>G 
 p.Tyr324Ter 
 Unknown 
  
 Unknown 
 GEN179R203 
 stop_gained 
 c.607A>T 
 p.Lys203Ter 
 Unknown 
  
 Unknown 
 GEN179R204a 
 copy_number_loss 
  
  
 Familial 
 Both parents 
 Simplex 
 GEN179R205a 
 copy_number_loss 
  
  
 Unknown 
  
 Multiplex 
 GEN179R205b 
 copy_number_loss 
  
  
 Unknown 
  
 Multiplex 
 GEN179R206 
 copy_number_loss 
  
  
 4 de novo, 8 inherited, 18 unknown 
  
 Unknown 
 GEN179R207 
 missense_variant 
 c.3763G>A 
 p.Val1255Ile 
 De novo 
  
 Simplex 
 GEN179R208 
 missense_variant 
 c.1174A>C 
 p.Asn392His 
 De novo 
  
 Simplex 
 GEN179R209 
 missense_variant 
 c.308C>T 
 p.Thr103Ile 
 Familial 
 Paternal 
 Simplex 
 GEN179R210 
 missense_variant 
 c.1945C>T 
 p.Leu649= 
 Familial 
 Maternal 
 Simplex 
 GEN179R211 
 missense_variant 
 c.1691A>G 
 p.Arg564Gly 
 Familial 
 Paternal 
 Multiplex 
 GEN179R212 
 frameshift_variant 
 c.2489del 
 p.Asn830IlefsTer25 
 Unknown 
  
 Unknown 
 GEN179R213 
 missense_variant 
 c.2804T>G 
 p.Leu935Arg 
 Unknown 
  
 Unknown 
 GEN179R214 
 missense_variant 
 c.2166G>T 
 p.Gln722His 
 Unknown 
  
 Unknown 
 GEN179R215 
 missense_variant 
 c.859A>C 
 p.Lys287Gln 
 Unknown 
  
 Unknown 
 GEN179R216 
 missense_variant 
 c.302C>T 
 p.Ala101Val 
 Unknown 
  
 Unknown 
 GEN179R217 
 missense_variant 
 c.2884C>G 
 p.Gln962Glu 
 Unknown 
  
 Unknown 
 GEN179R218 
 missense_variant 
 c.2725C>A 
 p.Leu909Met 
 Unknown 
  
 Unknown 
 GEN179R219a 
 copy_number_loss 
  
  
 Familial 
 Both parents 
 Simplex 
 GEN179R220 
 missense_variant 
 c.2437C>T 
 p.Arg813Cys 
 Familial 
 Paternal 
 Simplex 
 GEN179R221 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN179R222 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN179R223 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Extended multiplex 
 GEN179R224 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R225 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Multiplex 
 GEN179R226 
 frameshift_variant 
 c.3018del 
 p.Phe1006LeufsTer26 
 Familial 
 Maternal 
  
 GEN179R227 
 missense_variant 
 c.2785G>A 
 p.Asp929Asn 
 Familial 
 Maternal 
  
 GEN179R228 
 missense_variant 
 c.3308C>T 
 p.Pro1103Leu 
 Familial 
 Maternal 
  
 GEN179R229 
 missense_variant 
 c.2573G>A 
 p.Gly858Glu 
 Familial 
 Maternal 
  
 GEN179R230 
 missense_variant 
 c.2785G>A 
 p.Asp929Asn 
 Familial 
 Paternal 
  
 GEN179R231 
 copy_number_gain 
  
  
 De novo 
  
  
 GEN179R232 
 complex_structural_alteration 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R233 
 frameshift_variant 
 c.4166del 
 p.Thr1389AsnfsTer57 
 De novo 
  
 Simplex 
 GEN179R234 
 missense_variant 
 c.41C>T 
 p.Ser14Leu 
 Familial 
 Paternal 
 Simplex 
 GEN179R235 
 missense_variant 
 c.2242C>A 
 p.Leu748Ile 
 Familial 
 Paternal 
 Simplex 
 GEN179R236 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R237 
 missense_variant 
 c.2110G>A 
 p.Gly704Arg 
 Familial 
  
 Simplex 
 GEN179R238 
 missense_variant 
 c.3333G>A 
 p.Met1111Ile 
 Familial 
  
 Simplex 
 GEN179R239 
 missense_variant 
 c.64G>C 
 p.Gly22Arg 
 De novo 
  
 Simplex 
 GEN179R240 
 loss_of_function_variant 
  
  
 De novo 
  
  
 GEN179R241 
 missense_variant 
  
  
 De novo 
  
  
 GEN179R242 
 splicing_variant 
  
  
 De novo 
  
  
 GEN179R243 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R244 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R245 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Extended multiplex 
 GEN179R246 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R247 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R248 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R249 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN179R250 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R251 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R252 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R253 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R254 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R255 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R256 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R257 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R258 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R259 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R260 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R261 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R262 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R263 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R264 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R265 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R266 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R267 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R268 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R269 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R270 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R271 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R272 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R273 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R274 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R275 
 missense_variant 
 c.2558G>A 
 p.Arg853His 
 De novo 
  
 Simplex 
 GEN179R276 
 missense_variant 
 c.2354G>A 
 p.Arg785Gln 
 Familial 
 Maternal 
 Simplex 
 GEN179R277 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN179R278 
 translocation 
  
  
 De novo 
  
  
 GEN179R279 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R280 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R281 
 stop_gained 
 c.1540G>T 
 p.Glu514Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN179R282a 
 missense_variant 
 c.28G>A 
 p.Gly10Ser 
  
 Both parents 
 Multiplex 
 GEN179R283 
 stop_gained 
 c.664G>T 
 p.Glu222Ter 
 De novo 
  
 Simplex 
 GEN179R284 
 frameshift_variant 
 c.4311del 
 p.Cys1438ValfsTer8 
 De novo 
  
 Simplex 
 GEN179R285 
 intron_variant 
 c.3485-11T>C 
  
 De novo 
  
 Simplex 
 GEN179R286 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Not simplex 
 GEN179R287 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN179R288 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN179R289 
 frameshift_variant 
 c.471dup 
 p.Leu158AlafsTer29 
 De novo 
  
 Simplex 
 GEN179R290 
 frameshift_variant 
 c.1285del 
 p.Ile429TyrfsTer60 
 Familial 
 Maternal 
 Simplex 
 GEN179R291 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R292 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R293 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN179R294 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R295 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R296 
 minisatellite 
  
  
 Unknown 
  
 Simplex 
 GEN179R297 
 missense_variant 
 c.3640G>A 
 p.Val1214Ile 
 Unknown 
  
 Unknown 
 GEN179R298 
 missense_variant 
 c.3715G>A 
 p.Ala1239Thr 
 Unknown 
  
 Unknown 
 GEN179R299 
 missense_variant 
 c.3595G>A 
 p.Ala1199Thr 
 Unknown 
  
 Unknown 
 GEN179R300 
 missense_variant 
 c.3595G>A 
 p.Ala1199Thr 
 Unknown 
  
 Unknown 
 GEN179R301 
 missense_variant 
 c.3490G>A 
 p.Val1164Ile 
 Unknown 
  
 Unknown 
 GEN179R302 
 missense_variant 
 c.2566C>T 
 p.Arg856Trp 
 Familial 
 Maternal 
 Simplex 
 GEN179R303 
 missense_variant 
 c.2315A>G 
 p.Asp772Gly 
 Familial 
 Maternal 
 Simplex 
 GEN179R304 
 missense_variant 
 c.2210C>T 
 p.Thr737Met 
 Familial 
 Maternal 
 Simplex 
 GEN179R305 
 missense_variant 
 c.2210C>T 
 p.Thr737Met 
 Unknown 
  
 Unknown 
 GEN179R306 
 missense_variant 
 c.1851T>G 
 p.His617Gln 
 De novo 
  
  
 GEN179R307 
 missense_variant 
 c.1558G>C 
 p.Asp520His 
 De novo 
  
  
 GEN179R308 
 frameshift_variant 
 c.2439_2446delinsC 
 p.Gly814Ter 
 Unknown 
  
  
 GEN179R309 
 stop_gained 
 c.4509C>G 
 p.Tyr1503Ter 
 Unknown 
  
  
 GEN179R310 
 stop_gained 
 c.4509C>G 
 p.Tyr1503Ter 
 Unknown 
  
 Simplex 
 GEN179R311 
 splice_site_variant 
 c.1879+1G>A 
  
 Unknown 
  
  
 GEN179R312 
 splice_site_variant 
 c.3484+1G>A 
  
 Unknown 
  
  
 GEN179R313 
 missense_variant 
 c.2959G>A 
 p.Gly987Arg 
 Unknown 
  
  
 GEN179R314 
 missense_variant 
 c.2566C>T 
 p.Arg856Trp 
 Unknown 
  
  
 GEN179R315 
 missense_variant 
 c.2566C>T 
 p.Arg856Trp 
 Unknown 
  
  
 GEN179R316 
 missense_variant 
 c.4438G>A 
 p.Ala1480Thr 
 Unknown 
  
  
 GEN179R317 
 missense_variant 
 c.2618G>A 
 p.Gly873Asp 
 Unknown 
  
  
 GEN179R318 
 missense_variant 
 c.2618G>A 
 p.Gly873Asp 
 Unknown 
  
  
 GEN179R319 
 missense_variant 
 c.3572G>T 
 p.Arg1191Ile 
 Unknown 
  
 Simplex 
 GEN179R320 
 missense_variant 
 c.2390C>T 
 p.Ala797Val 
 Unknown 
  
  
 GEN179R321 
 missense_variant 
 c.2267C>A 
 p.Ala756Glu 
 Unknown 
  
  
 GEN179R322 
 missense_variant 
 c.3340G>A 
 p.Gly1114Arg 
 Unknown 
  
  
 GEN179R323 
 missense_variant 
 c.3620G>A 
 p.Arg1207Gln 
 Unknown 
  
  
 GEN179R324 
 missense_variant 
 c.3620G>A 
 p.Arg1207Gln 
 Unknown 
  
  
 GEN179R325 
 missense_variant 
 c.2295G>A 
 p.Met765Ile 
 Unknown 
  
  
 GEN179R326 
 missense_variant 
 c.2295G>A 
 p.Met765Ile 
 Unknown 
  
  
 GEN179R327 
 missense_variant 
 c.1874G>A 
 p.Arg625Gln 
 Unknown 
  
  
 GEN179R328 
 missense_variant 
 c.1874G>A 
 p.Arg625Gln 
 Unknown 
  
  
 GEN179R329 
 frameshift_variant 
 c.412dup 
 p.Val138GlyfsTer49 
 Unknown 
  
  
 GEN179R330 
 frameshift_variant 
 c.3060_3063del 
 p.Lys1021LeufsTer10 
 Unknown 
  
  
 GEN179R331 
 missense_variant 
 c.2557C>T 
 p.Arg853Cys 
 Unknown 
  
  
 GEN179R332 
 missense_variant 
 c.4118C>T 
 p.Ser1373Phe 
 Unknown 
  
  
 GEN179R333 
 missense_variant 
 c.1658C>T 
 p.Pro553Leu 
 Unknown 
  
  
 GEN179R334 
 missense_variant 
 c.391G>A 
 p.Asp131Asn 
 Unknown 
  
  
 GEN179R335 
 missense_variant 
 c.4295A>T 
 p.Asp1432Val 
 Unknown 
  
  
 GEN179R336 
 missense_variant 
 c.2684G>A 
 p.Arg895Gln 
 Unknown 
  
  
 GEN179R337 
 missense_variant 
 c.2629G>C 
 p.Gly877Arg 
 Unknown 
  
  
 GEN179R338 
 missense_variant 
 c.2222A>T 
 p.Asp741Val 
 Unknown 
  
  
 GEN179R339 
 missense_variant 
 c.1873C>T 
 p.Arg625Trp 
 Unknown 
  
  
 GEN179R340 
 missense_variant 
 c.4187C>T 
 p.Thr1396Met 
 Unknown 
  
  
 GEN179R341 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN179R342 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN179R343a 
 missense_variant 
 c.611T>A 
 p.Leu204Gln 
 Familial 
 Both parents 
 Multiplex 
 GEN179R344 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN179R345 
 frameshift_variant 
 c.925dup 
 p.Ser309LysfsTer2 
 De novo 
  
  
 GEN179R346 
 missense_variant 
 c.4363G>C 
 p.Glu1455Gln 
 De novo 
  
  
 GEN179R347 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R348 
 splice_site_variant 
 c.3484+1G>T 
  
 Familial 
 Maternal 
 Simplex 
 GEN179R349 
 copy_number_loss 
  
  
 Familial 
 Paternal 
  
 GEN179R350a 
 missense_variant 
 c.4456C>A 
 p.Leu1486Ile 
 Familial 
 Maternal 
  
 GEN179R350b 
 missense_variant 
 c.4237C>T 
 p.Pro1413Ser 
 Familial 
 Paternal 
  
 GEN179R351 
 splice_site_variant 
 c.931+1G>T 
  
 Familial 
 Maternal 
 Multiplex 
 GEN179R352 
 missense_variant 
 c.2687G>A 
 p.Arg896Gln 
 Unknown 
  
 Simplex 
 GEN179R353 
 inframe_insertion 
 c.77_79dup 
 p.Glu26_Leu27insGln 
 Unknown 
  
  
  et al.  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN179C001 
 synonymous_variant 
 rs1045874 
 c.511C>T 
 p.(=) 
  
 Discovery 
 GEN179C002 
 synonymous_variant 
 rs2303298 
 c.999C>T;c.900C>T;c.840C>T;c.105C>T 
 p.(=) 
  
 Discovery 
 GEN179C003 
 3_prime_UTR_variant 
 rs1045881 
 c.*110G>A 
  
  
 Discovery 
 GEN179C004 
 synonymous_variant 
 rs2303298 
 c.999C>T;c.900C>T;c.840C>T;c.105C>T 
 p.(=) 
 Chinese Han 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Deletion-Duplication
 14
 
2
Deletion-Duplication
 81
 
2
Deletion-Duplication
 3
 
2
Deletion
 5
 
2
Duplication
 1
 
2
Duplication
 1
 

Model Summary

Nrxn1- alpha null rats show increased hyperactivity levels and decrease in learning and memory.

References

Type
Title
Author, Year
Primary
Phenotypic characterization of nonsocial behavioral impairment in neurexin 1 knockout rats.
Additional
An intra-amygdala circuit specifically regulates social fear learning.
Additional
Convergent microstructural brain changes across genetic models of autism spectrum disorder-A pilot study.

R_NRXN1_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Biallelic deletion of NRXN1-alpha.
Allele Type: Targeted (knockout)
Strain of Origin: Not Specified
Genetic Background: Sprague Dawley
ES Cell Line: Not Specified
Mutant ES Cell Line: Not Specified
Model Source: SAGE Labs

R_NRXN1_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
General locomotor activity1
Increased
Description: Increased activity
Exp Paradigm: Open field test
 Open field test
 4-5.5 months
Hippocampal morphology3
Abnormal
Description: Significant difference in axial diffusivity
Exp Paradigm: Measurement of fractional anisotropy, mean, axial and radial diffusivity
 Diffusion tensor imaging (dti)
 6 weeks
Brain morphology3
Abnormal
Description: Tract-based spatial statistics show significant differences in fractional anisotropy, mean and radial diffusivity
Exp Paradigm: Measurement of fractional anisotropy, mean, axial and radial diffusivity
 Diffusion tensor imaging (dti)
 6 weeks
Morphology of the external capsule3
Abnormal
Description: Significant difference in axial diffusivity
Exp Paradigm: Measurement of fractional anisotropy, mean, axial and radial diffusivity
 Diffusion tensor imaging (dti)
 6 weeks
Morphology and size of the corpus callosum3
Abnormal
Description: Significant difference in mean diffusivity
Exp Paradigm: Measurement of fractional anisotropy, mean, axial and radial diffusivity
 Diffusion tensor imaging (dti)
 6 weeks
Local field potential2
Decreased
Description: Decreased local field potential
Exp Paradigm: In vivo local field potential (LFP) recordings
 In vivo local field potential (lfp) recordings
 2-3 months
Action potential firing2
Decreased
Description: Decreased action potential firing
Exp Paradigm: In vivo local field potential (LFP) recordings
 In vivo local field potential (lfp) recordings
 2-3 months
Presynaptic function: paired-pulse facilitation2
Decreased
Description: Decreased paired-pulse facilitation
Exp Paradigm: Whole-cell patch clamp
 Whole-cell patch clamp
 2-3 months
Membrane potential2
Decreased
Description: Decreased membrane potential
Exp Paradigm: Whole-cell patch clamp
 Whole-cell patch clamp
 2-3 months
Startle response: acoustic stimulus1
Increased
Description: Increased startle response
Exp Paradigm: Acoustic startle reflex test
 Acoustic startle reflex test
 4-5.5 months
Social approach2
Decreased
Description: Decreased social approach
Exp Paradigm: Reciprocal social interaction test
 Reciprocal social interaction test
 2-3 months
Social fear conditioning: memory of cue2
Decreased
Description: Decreased memory in cued social fear conditioning
Exp Paradigm: Fear conditioning test
 Fear conditioning test
 2-3 months
Social fear conditioning: memory of context2
Decreased
Description: Decreased memory in contextual social fear conditioning
Exp Paradigm: Fear conditioning test
 Fear conditioning test
 2-3 months
Social fear conditioning: learning2
Decreased
Description: Decreased learning in social fear conditioning
Exp Paradigm: Fear conditioning test
 Fear conditioning test
 2-3 months
Social interaction2
Decreased
Description: Decreased social interaction
Exp Paradigm: Reciprocal social interaction test
 Reciprocal social interaction test
 2-3 months
Size/growth1
Decreased
Description: Decreased weight
Exp Paradigm: General observations
 General observations
 4-5.5 months
Morphology of the internal capsule3
 No change
 Diffusion tensor imaging (dti)
 6 weeks
Neocortex morphology3
 No change
 Diffusion tensor imaging (dti)
 6 weeks
Thalamic morphology3
 No change
 Diffusion tensor imaging (dti)
 6 weeks
Intrinsic membrane properties2
 No change
 Whole-cell patch clamp
 2-3 months
Miniature post synaptic currents: excitatory2
 No change
 Whole-cell patch clamp
 2-3 months
Sensorimotor gating1
 No change
 Prepulse inhibition
 4-5.5 months
Inanimate object preference2
 No change
 Reciprocal social interaction test
 2-3 months
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
GABRA1 gamma-aminobutyric acid (GABA) A receptor, alpha 1 2554 P14867 Surface plasmon resonance (SPR); IP/WB
Zhang C , et al. 2010
LRRTM2 leucine rich repeat transmembrane neuronal 2 26045 O43300 IP/WB
Um JW , et al. 2016
LRRTM3 leucine rich repeat transmembrane neuronal 3 347731 Q86VH5 IP/WB
Um JW , et al. 2016
LRRTM4 leucine rich repeat transmembrane neuronal 4 80059 Q86VH4 IP/WB
Um JW , et al. 2016
MACF1 microtubule-actin crosslinking factor 1 23499 Q9UPN3 Y2H
Nakayama M , et al. 2002
MLLT4 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 4301 P55196 Y2H
Hock B , et al. 1998
MYO16 myosin XVI 23026 Q9Y6X6 Y2H
Nakayama M , et al. 2002
PDZD2 PDZ domain containing 2 23037 O15018 Y2H
Nakayama M , et al. 2002
SIPA1L1 signal-induced proliferation-associated 1 like 1 26037 O43166 Y2H
Nakayama M , et al. 2002
APBA2 amyloid beta (A4) precursor protein-binding, family A, member 2 321 Q59G28 GST; IP/WB
Biederer T and Sdhof TC 2000
Arx aristaless related homeobox 11878 O35085 ChIP-qPCR
Quill ML , et al. 2011
Astn1 astrotactin 1 11899 Q61137 IP; LC-MS/MS
Traunmller L , et al. 2016
Auts2 autism susceptibility candidate 2 319974 Q6PED7 ChIP-Seq; Zebrafish reporter transgenic studies
Oksenberg N , et al. 2014
C3 complement component 3 12266 P01027 IP/WB; IP; LC-MS/MS
Traunmller L , et al. 2016
Cask calcium/calmodulin-dependent serine protein kinase (MAGUK family) 12361 O70589 IP; LC-MS/MS
Muhammad K , et al. 2015
Cbln1 cerebellin 1 precursor 12404 Q9R171 GST; Surface plasmon resonance (SPR)
Uemura T , et al. 2010
Cbln2 cerebellin 2 precursor protein 12405 Q8BGU2 IP; LC-MS/MS
Traunmller L , et al. 2016
Cbln4 cerebellin 4 precursor protein 228942 Q8BME9 IP; LC-MS/MS
Traunmller L , et al. 2016
Chadl chondroadherin-like 214685 E9Q7T7 IP; LC-MS/MS
Traunmller L , et al. 2016
DLG4 Postsynaptic density protein 95 13385 Q62108 IP; LC-MS/MS
Frank RA , et al. 2016
FMR1 fragile X mental retardation 1 14265 P35922 HITS-CLIP
Darnell JC , et al. 2011
GRID2 glutamate receptor, ionotropic, delta 2 14804 Q61625 IP; LC-MS/MS; Cell surface binding assay; Cell aggregation assay; in vitro binding assay
Uemura T , et al. 2010
Khdrbs3 KH domain containing, RNA binding, signal transduction associated 3 13992 Q9R226 RNA-Seq; RT-PCR
Traunmller L , et al. 2016
Lin7c lin-7 homolog C (C. elegans) 22343 A2ARI2 MS/MS
Olsen O , et al. 2005
Lrrtm1 leucine rich repeat transmembrane neuronal 1 74342 Q8K377 IP; LC-MS/MS
Traunmller L , et al. 2016
Lrrtm2 leucine rich repeat transmembrane neuronal 2 107065 Q8BGA3 IP; LC-MS/MS
Traunmller L , et al. 2016
Lrrtm3 leucine rich repeat transmembrane neuronal 3 216028 Q8BZ81 IP; LC-MS/MS
Traunmller L , et al. 2016
Lrrtm4 leucine rich repeat transmembrane neuronal 4 243499 Q80XG9 IP; LC-MS/MS
Traunmller L , et al. 2016
Net1 neuroepithelial cell transforming gene 1 56349 O09118 IP; LC-MS/MS
Traunmller L , et al. 2016
NLGN1 neuroligin 1 192167 Q99K10 IP/WB; Cell aggregation assay; Co-localization
Singh SK , et al. 2016
Nlgn1 neuroligin 1 192167 Q99K10 IP/WB; IP; LC-MS/MS
Traunmller L , et al. 2016
Nlgn2 neuroligin 2 216856 Q69ZK9 IP; LC-MS/MS
Traunmller L , et al. 2016
Nlgn3 neuroligin 3 245537 Q8BYM5 IP/WB; IP; LC-MS/MS
Traunmller L , et al. 2016
Nlgn4l neuroligin 4-like 100113365 B0F2B4 IP; LC-MS/MS
Traunmller L , et al. 2016
Nptx1 neuronal pentraxin 1 18164 Q62443 IP; LC-MS/MS
Traunmller L , et al. 2016
Nptxr neuronal pentraxin receptor 73340 Q99J85 IP; LC-MS/MS
Traunmller L , et al. 2016
Rbfox1 RNA binding protein, fox-1 homolog (C. elegans) 1 268859 Q9JJ43 HITS-CLIP
Weyn-Vanhentenryck SM , et al. 2014
Sdcbp syndecan binding protein 53378 O08992 IP; LC-MS/MS
Muhammad K , et al. 2015
Sorcs1 sortilin-related VPS10 domain containing receptor 1 58178 Q9JLC4 IP; LC-MS/MS
Traunmller L , et al. 2016
Sorcs2 sortilin-related VPS10 domain containing receptor 2 81840 Q9EPR5 IP; LC-MS/MS
Traunmller L , et al. 2016
Sorcs3 sortilin-related VPS10 domain containing receptor 3 66673 Q8VI51 IP; LC-MS/MS
Traunmller L , et al. 2016
SPARCL1 SPARC-like 1 13602 P70663 IP/WB; Cell surface binding assay
Singh SK , et al. 2016
Spon1 spondin 1, (f-spondin) extracellular matrix protein 233744 Q8VCC9 IP; LC-MS/MS
Traunmller L , et al. 2016
Syt13 synaptotagmin XIII 80976 Q9EQT6 GST
Fukuda M and Mikoshiba K 2001
Sytl1 synaptotagmin-like 1 269589 Q99N80 GST
Fukuda M and Mikoshiba K 2001
Sytl2 synaptotagmin-like 2 83671 Q99N50 GST
Fukuda M and Mikoshiba K 2001
Sytl3 synaptotagmin-like 3 83672 Q99N48 GST
Fukuda M and Mikoshiba K 2001
Thbs1 thrombospondin 1 21825 P35441 IP; LC-MS/MS
Traunmller L , et al. 2016
Zbtb20 zinc finger and BTB domain containing 20 56490 Q8K0L9 ChIP-Seq; Gene microarray
Rasmussen MB , et al. 2014
Abpa2 amyloid beta (A4) precursor protein-binding, family A, member 2 83610 O35431 GST
Biederer T and Sdhof TC 2000
Apba1 amyloid beta (A4) precursor protein-binding, family A, member 1 83589 O35430 GST
Biederer T and Sdhof TC 2000
Cask calcium/calmodulin-dependent serine protein kinase (MAGUK family) 29647 Q62915 Y2H; Affinity chromatography
Hata Y , et al. 1996
LRRTM1 leucine rich repeat transmembrane neuronal 1 679668 D4A6D8 IP; LC-MS/MS
Savas JN , et al. 2015
Lrrtm2 leucine rich repeat transmembrane neuronal 2 685472 D4A7P2 Affinity chromatography; MS; Cell surface binding assay
de Wit J , et al. 2010
MIB1 mindbomb E3 ubiquitin protein ligase 1 307594 D3ZUV2 Affinity chromatography; LC-MS/MS
Mertz J , et al. 2015
Nlgn1 neuroligin 1 116647 Q62765 IP; LC-MS/MS; Co-localization
Savas JN , et al. 2015
NLGN1 neuroligin 1 116647 Q62765 Affinity chromatography; IP/WB
Ichtchenko K , et al. 1995
Nlgn1 neuroligin 1 116647 Q62765 Affinity chromatography
Ichtchenko K , et al. 1996
Nlgn2 neuroligin 2 117096 Q62888 IP; LC-MS/MS
Savas JN , et al. 2015
Nlgn2 neuroligin 2 117096 Q62888 Affinity chromatography
Ichtchenko K , et al. 1996
Nlgn3 neuroligin 3 171297 Q62889 IP; LC-MS/MS
Savas JN , et al. 2015
Nlgn3 neuroligin 3 171297 Q62889 Affinity chromatography
Ichtchenko K , et al. 1996
Nxph1 neurexophilin 1 25501 Q63366 Affinity chromatography
Missler M and Sdhof TC 1998
Nxph3 neurexophilin 3 59315 Q9Z2N5 WB; Affinity chromatography
Missler M , et al. 1998
Ppp1r9b protein phosphatase 1, regulatory subunit 9B 84686 O35274 in vitro binding assay; IP; LC-MS/MS
Muhammad K , et al. 2015
Rph3a rabphilin 3A homolog (mouse) 22895 P47709 Affinity chromatography
Perin MS 1996
SDCBP2 syndecan binding protein (syntenin) 2 27111 Q9H190 Y2H
Koroll M , et al. 2001
Sorcs1 sortilin-related VPS10 domain containing receptor 1 309533 F1LUZ4 IP; LC-MS/MS; in vitro binding assay; Co-localization; Cell surface binding assay
Savas JN , et al. 2015
Sorcs2 sortilin-related VPS10 domain containing receptor 2 305438 D3ZW09 IP; LC-MS/MS
Savas JN , et al. 2015
Syt1 synaptotagmin I 25716 P21707 Affinity chromatography; GST; I-125 binding assay
Hata Y , et al. 1993
Syt2 synaptotagmin II 24805 P29101 Affinity chromatography
Perin MS 1996
Syt4 synaptotagmin IV 64440 P50232 Affinity chromatography
Perin MS 1996
Syt5 synaptotagmin V 54309 P47861 Affinity chromatography
Perin MS 1996
Syt6 synaptotagmin VI 60565 Q62746 Affinity chromatography
Perin MS 1996
Syt7 synaptotagmin VII 59267 Q62747 Affinity chromatography
Perin MS 1996
Syt9 synaptotagmin IX 60564 Q925C0 Affinity chromatography
Perin MS 1996

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