Summary Statistics:
ASD Reports: 27
Recent Reports: 4
Annotated variants: 83
Associated CNVs: 7
Evidence score: 4
Gene Score: 4S
Relevance to Autism
One of the six patients with Bosch-Boonstra-Schaaf optic atrophy syndrome described in Bosch et al., 2014 presented with autism spectrum disorder with marked obsessive-compulsive behaviors. Evaluation of the clinical features of 20 individuals with novel pathogenic NR2F1 variants demonstrated that, in addition to visual and cognitive deficits, individuals with BBSOAS manifested hypotonia (75%), seizures (40%), repetitive behavior (40%), autism spectrum disorder (35%), oromotor dysfunction (60%), thinning of the corpus callosum (53%), and hearing defects (20%) (Chen et al., 2016). De novo probably damaging missense variants in NR2F1 have also been observed in two ASD probands: one from the Simons Simplex Collection (Sanders et al., 2012), the other from the Autism Sequencing Consortium (De Rubeis et al., 2014).
Molecular Function
The protein encoded by this gene is a nuclear hormone receptor and transcriptional regulator that binds to 5'-AGGTCA-3' repeats. Heterozygous mutations in this gene are a cause of Bosch-Boonstra-Schaaf optic atrophy syndrome (BBSOAS; OMIM 615722), an autosomal dominant disorder characterized by delayed development, moderate intellectual disability, and optic atrophy (Bosch et al., 2014).
References
Primary
NR2F1 mutations cause optic atrophy with intellectual disability.
Bosch-Boonstra-Schaaf optic atrophy syndrome
ID, ASD
Positive Association
Tourette syndrome
Support
Lessons learned from additional research analyses of unsolved clinical exome cases.
ASD, DD, epilepsy/seizures
Support
Autism risk in offspring can be assessed through quantification of male sperm mosaicism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies.
DD
Multiple congenital anomalies
Support
Increased diagnostic and new genes identification outcome using research reanalysis of singleton exome sequencing.
ID, epilepsy/seizures
Support
NR2F1 database: 112 variants and 84 patients support refining the clinical synopsis of Bosch-Boonstra-Schaaf optic atrophy syndrome
Bosch-Boonstra-Schaaf optic atrophy syndrome
Support
Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability
ID
Support
The combination of whole-exome sequencing and copy number variation sequencing enables the diagnosis of rare neurological disorders.
Epilepsy/seizures
DD, ID
Support
Novel dominant-negative NR2F1 frameshift mutation and a phenotypic expansion of the Bosch-Boonstra-Schaaf optic atrophy syndrome
Bosch-Boonstra-Schaaf optic atrophy syndrome
ASD, DD, epilepsy/seizures
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Bosch-Boonstra-Schaaf optic atrophy syndrome
Support
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Support
NR2F1 regulates regional progenitor dynamics in the mouse neocortex and cortical gyrification in BBSOAS patients
Bosch-Boonstra-Schaaf optic atrophy syndrome
Support
De novo mutations revealed by whole-exome sequencing are strongly associated with autism.
ASD
Support
Bosch-Boonstra-Schaaf optic atrophy syndrome
Support
Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism.
ASD
Support
Missense NR2F1 variant in monozygotic twins affected with the Bosch-Boonstra-Schaaf optic atrophy syndrome
Bosch-Boonstra-Schaaf optic atrophy syndrome
Support
DD, ID, epilepsy/seizures
Support
A clinical utility study of exome sequencing versus conventional genetic testing in pediatric neurology.
Psychomotor retardation
Support
Rare genetic susceptibility variants assessment in autism spectrum disorder: detection rate and practical use.
ASD
Recent Recommendation
Imbalance of Excitatory/Inhibitory Neuron Differentiation in Neurodevelopmental Disorders with an NR2F1 Point Mutation
ASD
Recent Recommendation
Phenotypic expansion of Bosch-Boonstra-Schaaf optic atrophy syndrome and further evidence for genotype-phenotype correlations
Bosch-Boonstra-Schaaf optic atrophy syndrome
ASD or autistic features, ADHD
Recent Recommendation
The expanding clinical phenotype of Bosch-Boonstra-Schaaf optic atrophy syndrome: 20 new cases and possible genotype-phenotype correlations.
Bosch-Boonstra-Schaaf optic atrophy syndrome
ID, ASD, epilepsy/seizures, ADHD
Recent Recommendation
Pathogenic NR2F1 variants cause a developmental ocular phenotype recapitulated in a mutant mouse model
Bosch-Boonstra-Schaaf optic atrophy syndrome, DD
ASD, ADHD, learning disability, epilepsy/seizures
GEN817R001
missense_variant
c.344G>C
p.Arg115Pro
De novo
GEN817R002
missense_variant
c.339C>A
p.Ser113Arg
De novo
GEN817R003
missense_variant
c.755T>C
p.Leu252Pro
De novo
GEN817R004
copy_number_loss
Unknown
GEN817R005
copy_number_loss
De novo
GEN817R006
missense_variant
c.335G>A
p.Arg112Lys
De novo
Simplex
GEN817R007
missense_variant
c.1211G>A
p.Arg404His
De novo
Simplex
GEN817R008
missense_variant
c.305C>T
p.Thr102Ile
De novo
GEN817R009
missense_variant
c.382T>C
p.Cys128Arg
De novo
GEN817R010
missense_variant
c.403C>A
p.Arg135Ser
De novo
GEN817R011
missense_variant
c.413G>A
p.Cys138Tyr
De novo
GEN817R012
missense_variant
c.425G>T
p.Arg142Leu
De novo
GEN817R013
missense_variant
c.436T>C
p.Cys146Arg
De novo
GEN817R014
missense_variant
c.463G>A
p.Ala155Thr
De novo
GEN817R015
missense_variant
c.1103G>A
p.Gly368Asp
De novo
GEN817R016
inframe_deletion
c.328_330del
p.Phe110del
De novo
GEN817R017
frameshift_variant
c.103_113delinsCGCCGCCGC
p.Gly35ArgfsTer361
De novo
GEN817R018
frameshift_variant
c.291del
p.Tyr98ThrfsTer21
De novo
GEN817R019
initiator_codon_variant
c.2T>G
p.Met1?
De novo
GEN817R020
initiator_codon_variant
c.2T>G
p.Met1?
De novo
GEN817R021
initiator_codon_variant
c.2T>G
p.Met1?
De novo
GEN817R022
initiator_codon_variant
c.2T>G
p.Met1?
De novo
GEN817R023
initiator_codon_variant
c.2_4delinsGGA
p.MetAla1_?2
De novo
GEN817R024
copy_number_loss
De novo
GEN817R025
copy_number_loss
Familial
Paternal
Simplex
GEN817R026
copy_number_loss
Unknown
GEN817R027
copy_number_loss
Unknown
GEN817R028
missense_variant
c.314G>A
p.Gly105Asp
De novo
GEN817R029
complex_structural_alteration
De novo
GEN817R030
missense_variant
c.413G>A
p.Cys138Tyr
De novo
Simplex
GEN817R031
stop_gained
c.82C>T
p.Gln28Ter
De novo
Simplex
GEN817R032
missense_variant
c.314G>A
p.Gly105Asp
De novo
GEN817R033
missense_variant
c.531C>G
p.Asp177Glu
De novo
Simplex
GEN817R034
initiator_codon_variant
c.2T>C
p.Met1?
De novo
GEN817R035
missense_variant
c.289C>T
p.His97Tyr
De novo
GEN817R036
missense_variant
c.403C>T
p.Arg135Cys
De novo
GEN817R037
missense_variant
c.1184G>C
p.Gly395Ala
De novo
Simplex
GEN817R038
missense_variant
c.256T>C
p.Cys86Arg
De novo
GEN817R039
missense_variant
c.262G>A
p.Val88Met
De novo
GEN817R040
missense_variant
c.284G>T
p.Gly95Val
Unknown
GEN817R041
missense_variant
c.290A>C
p.His97Pro
Unknown
GEN817R042
missense_variant
c.293A>G
p.Tyr98Cys
De novo
GEN817R043
missense_variant
c.311A>G
p.Glu104Gly
De novo
GEN817R044
missense_variant
c.323G>T
p.Ser108Ile
Unknown
GEN817R045
missense_variant
c.365G>C
p.Cys122Ser
Unknown
GEN817R046
missense_variant
c.417A>T
p.Gln139His
De novo
GEN817R047
copy_number_loss
Familial
Maternal
GEN817R048
copy_number_loss
Unknown
GEN817R049
initiator_codon_variant
c.1A>G
p.Met1?
De novo
GEN817R050
initiator_codon_variant
c.2T>C
p.Met1?
De novo
GEN817R051
frameshift_variant
c.380dup
p.Asn127LysfsTer270
Unknown
GEN817R052
stop_gained
c.1117C>T
p.Arg373Ter
De novo
GEN817R053
missense_variant
c.931G>C
p.Ala311Pro
Unknown
GEN817R054
missense_variant
c.954G>C
p.Glu318Asp
De novo
GEN817R055
missense_variant
c.1217T>C
p.Met406Thr
De novo
GEN817R056
missense_variant
c.313G>A
p.Gly105Ser
De novo
Multiplex (monozygotic twins)
GEN817R057
frameshift_variant
c.1083del
p.Asn362ThrfsTer33
De novo
Simplex
GEN817R058
frameshift_variant
c.4del
p.Ala2GlnfsTer3
De novo
GEN817R059
frameshift_variant
c.51_69dup
p.Asn24GlyfsTer379
Unknown
GEN817R060
inframe_insertion
c.91_93dup
p.Arg31dup
Unknown
GEN817R061
stop_gained
c.115G>T
p.Glu39Ter
De novo
GEN817R062
missense_variant
c.290A>C
p.His97Pro
De novo
GEN817R063
stop_gained
c.353T>G
p.Leu118Ter
De novo
GEN817R064
frameshift_variant
c.359dup
p.Tyr120Ter
Unknown
GEN817R065
missense_variant
c.366C>G
p.Cys122Trp
De novo
GEN817R066
missense_variant
c.463G>A
p.Ala155Thr
De novo
GEN817R067
stop_gained
c.513G>C
p.Tyr171Ter
Unknown
GEN817R068
missense_variant
c.599C>G
p.Thr200Arg
De novo
GEN817R069
stop_gained
c.698G>A
p.Trp233Ter
De novo
GEN817R070
missense_variant
c.1024G>A
p.Glu342Lys
De novo
GEN817R071
inframe_deletion
c.1036_1047del
p.Glu346_Gln349del
Unknown
GEN817R072
missense_variant
c.1115T>C
p.Leu372Pro
Familial
Maternal
Multiplex
GEN817R073
inframe_deletion
c.1118_1123del
p.Arg373_Leu374del
Familial
Maternal
Simplex
GEN817R074
missense_variant
c.1183G>A
p.Gly395Ser
De novo
GEN817R075
stop_gained
c.1198G>T
p.Glu400Ter
De novo
GEN817R076
copy_number_loss
De novo
GEN817R077
stop_gained
c.124C>T
p.Gln42Ter
De novo
Simplex
GEN817R078
missense_variant
c.766T>G
p.Trp256Gly
De novo
GEN817R079
synonymous_variant
c.993C>T
p.Asp331%3D
De novo
GEN817R080
inframe_deletion
c.1036_1038del
p.Glu346del
De novo
GEN817R081
missense_variant
c.320A>G
p.Lys107Arg
De novo
GEN817R082
frameshift_variant
c.21_43del
p.Trp8GlyfsTer381
De novo
GEN817C001
intergenic_variant
rs2453763
T>A
GWAS meta-analysis cohort consisting of 6,133 individuals with Tourette syndrome and 13,565 ancestry-matched controls.
Discovery
5
Deletion-Duplication
19
Summary Statistics:
# of Reports: 1
# of Models: 2
Model Summary
Mouse Nr2f1 gene is involved in both dorsal and ventral telencephalic development. Nr2f1 heterozygous mice show E/I imbalance of neurons in the primary somatosensory cortex, impaired social interaction, impaired social memory, repetitive self-grooming, anxiety, decreaded spatial memory, no change in motor coordination. Treatment with GinkgolideA in adult mice, restored sociability, social memory, ameliorated self-grooming, improved spatial memory, decreased anxiety, in the short but not long term.
References
Primary
Imbalance of Excitatory/Inhibitory Neuron Differentiation in Neurodevelopmental Disorders with an NR2F1 Point Mutation
Model Type:
Genetic
Model Genotype:
Heterozygous
Mutation:
Nr2f1 point mutant mice with the humanized R112K substitution ( Nr2f1^+/m) were generated by injecting female C57BL/6 mice with Cas9 mRNAs, sgRNA, and donor oligo. The R112K point mutation (GRCh38.p12;chr5:93585358G>A; c.335G>A; p.R112K) locates in the DNA-binding domain of Nr2f1. Nr2f1^+/m;Gad1-GFP reporter mutant mice were generated for histological analyses. Nr2f1 point mutant mice were generated through in vitro fertilization (IVF) by injecting the CRISPR components in superovulated mice, as well as through natural mating.
Allele Type: Humanized LOF mutation
Strain of Origin: NA
Genetic Background: C57BL/6
ES Cell Line: NA
Mutant ES Cell Line: NA
Model Source: NA
Neuronal number: excitatory neurons1
Decreased
View More
Description: Decreased numbers of cux1+ and ctip2+ excitatory projection neurons
Exp Paradigm: NA
Immunofluorescence staining
2 months
Neuronal differentiation1
Abnormal
View More
Description: Altered neuron differentiation in the primary somatosensory cortex
Exp Paradigm: NA
Immunofluorescence staining
E12.5
Abnormal
View More
Description: Abnormal dorsal-ventral telencephalic specification assessed by reduced expression of dorsal npc markers (pax6, ngn1, and emx1) and increased expression of ventral npc markers (nkx2-1 and gsx1)
Exp Paradigm: NA
Immunofluorescence staining
E12.5
Neuronal number: inhibitory neurons1
Increased
View More
Description: Increased numbers of gad1+, pv+, and sst+ inhibitory interneurons; increased gad1-gfp positive neurons in the primary somatosensory cortex; increased numbers of gad1 positive interneurons in the pfc
Exp Paradigm: NA
Immunofluorescence staining
2 months
Miniature post synaptic current amplitude: excitatory1
Decreased
View More
Description: Decreased amplitudes of mepscs
Exp Paradigm: NA
Whole-cell patch clamp
2 months
Miniature post synaptic current frequency: inhibitory1
Increased
View More
Description: Increased amplitudes of mipscs
Exp Paradigm: NA
Whole-cell patch clamp
2 months
Miniature post synaptic current frequency: excitatory1
Decreased
View More
Description: Decreased frequencies of mepscs
Exp Paradigm: NA
Whole-cell patch clamp
2 months
Miniature post synaptic current amplitude: inhibitory1
Increased
View More
Description: Increased frequencies of mipscs
Exp Paradigm: NA
Whole-cell patch clamp
2 months
Increased
View More
Description: Decrease in spontaneous alternations of arms
Exp Paradigm: NA
Y-maze test
2 months
Self grooming: perseveration1
Increased
View More
Description: Increase in time spent self-grooming
Exp Paradigm: NA
Grooming behavior assessments
2 months
Decreased
View More
Description: Decreased preference for a novel mouse over a familiar mouse
Exp Paradigm: NA
Three-chamber social approach test
2 months
Decreased
View More
Description: Decreased preference for a novel mouse over an inanimate object
Exp Paradigm: NA
Three-chamber social approach test
2 months
Increased
View More
Description: Increased time spent in the dark arm
Exp Paradigm: NA
Light-dark exploration test
2 months
Increased
View More
Description: Increased time spent in the closed arm
Exp Paradigm: NA
Elevated plus maze test
2 months
Increased
View More
Description: Decreased time spent in the center
Exp Paradigm: NA
Open field test
2 months
Object recognition memory1
Decreased
View More
Description: Decreased time spent exploring novel object
Exp Paradigm: NA
Novel object recognition test
2 months
Decreased
View More
Description: Decreased spontaneous alternations of arms
Exp Paradigm: NA
Y-maze test
2 months
Signaling: hedgehog pathway1
Increased
View More
Description: Increased hedgehog pathway activity assessed by upregulation of shh and gli1 and downregulation of gli3 in the whole brain
Exp Paradigm: NA
Immunofluorescence staining
E12.5
Motor coordination and balance1
No change
Accelerating rotarod test
2 months
Neuronal number: excitatory neurons1
No change
Immunofluorescence staining
2 months
Action potential property: firing rate1
No change
Whole-cell patch clamp
2 months
Not Reported:
No Interactions Available