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Relevance to Autism

Screening of circadian-relevant genes in Japanese ASD patients with or without sleep disorders identified a missense variant in the NR1D1 gene (Yang et al., 2016). Additional screening of Caucasian ASD patients for NR1D1 variants identified several novel missense variants, including a de novo missense variant that failed to rescue defects in the positioning of cortical neurons in the embryonic mouse brain following RNAi-mediated knockdown of endogeneous Nr1d1 (Goto et al., 2017). However, NR1D1 variants identified in these two studies showed incomplete segregation with ASD. Nr1d1-knockout mice were shown to display hyperactivity, impaired response habituation in novel environments, deficiencies in contextual memories, and impaired nest-building activity, suggesting impaired hippocampal function (Jager et al., 2014).

Molecular Function

This gene encodes a transcription factor that is a member of the nuclear receptor subfamily 1. The encoded protein is a ligand-sensitive transcription factor that negatively regulates the expression of core clock proteins. In particular this protein represses the circadian clock transcription factor aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL). This protein may also be involved in regulating genes that function in metabolic, inflammatory and cardiovascular processes.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Circadian-relevant genes are highly polymorphic in autism spectrum disorder patients.
ASD
Support
Behavioral changes and dopaminergic dysregulation in mice lacking the nuclear receptor Rev-erb.
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Role of a circadian-relevant gene NR1D1 in brain development: possible involvement in the pathophysiology of autism spectrum disorders.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN898R001 
 missense_variant 
 c.58A>C 
 p.Ser20Arg 
 Familial 
 Paternal 
 Simplex 
 GEN898R002 
 missense_variant 
 c.1012C>T 
 p.Pro338Ser 
 Familial 
 Maternal 
 Multiplex 
 GEN898R003 
 missense_variant 
 c.1012C>T 
 p.Pro338Ser 
 Familial 
 Maternal 
 Multiplex 
 GEN898R004 
 missense_variant 
 c.1031A>C 
 p.Asn344Thr 
 Familial 
 Maternal 
 Multiplex 
 GEN898R005 
 missense_variant 
 c.1499G>A 
 p.Arg500His 
 De novo 
  
 Multiplex 
 GEN898R006 
 missense_variant 
 c.1153G>A 
 p.Gly385Arg 
 De novo 
  
  
 GEN898R007 
 synonymous_variant 
 c.747C>A 
 p.Pro249%3D 
 De novo 
  
  
 GEN898R008 
 missense_variant 
 c.233A>G 
 p.Asp78Gly 
 De novo 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Duplication
 1
 
17
Duplication
 1
 
17
Deletion
 2
 

No Animal Model Data Available

 

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