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Relevance to Autism

De novo variants in the NPFFR2 have been identified in ASD probands, including a de novo missense variant (p.Met163Ile) in a proband from the Simons Simplex Collection (Iossifov et al., 2014; Satterstrom et al., 2020), while a maternally-inherited loss-of-function variant in this gene was observed in two of three ASD-affected siblings from a multiplex family from the iHART cohort (Ruzzo et al., 2019). Functional assessment of the ASD-associated p.Met163Ile missense variant in Drosophila using an overexpression-based strategy in Macrogliese et al., 2022 demonstrated that flies overexpressing NPFFR2-p.Met163Ile failed to reduce the expected viability to the extent of the corresponding reference allele upon overexpression, indicating a loss-of-function effect.

Molecular Function

This gene encodes a member of a subfamily of G-protein-coupled neuropeptide receptors. This protein is activated by the neuropeptides A-18-amide (NPAF) and F-8-amide (NPFF) and may function in pain modulation and regulation of the opioid system.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Genomic Patterns of De Novo Mutation in Simplex Autism
ASD
Recent Recommendation
Drosophila functional screening of de novo variants in autism uncovers damaging variants and facilitates discovery of rare neurodevelopmental diseases
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1329R001 
 missense_variant 
 c.489G>A 
 p.Met163Ile 
 De novo 
  
 Simplex 
 GEN1329R002 
 intron_variant 
 c.-110+3493C>G 
  
 De novo 
  
 Multiplex 
 GEN1329R003 
 intron_variant 
 c.3-21102A>G 
  
 De novo 
  
 Multiplex 
 GEN1329R004 
 intron_variant 
 c.2+23476T>G 
  
 De novo 
  
 Simplex 
 GEN1329R005 
 intron_variant 
 c.438-2471_438-2467del 
  
 De novo 
  
 Simplex 
 GEN1329R006 
 frameshift_variant 
 c.1048del 
 p.Leu350SerfsTer16 
 Familial 
 Maternal 
 Multiplex 
 GEN1329R007 
 synonymous_variant 
 c.531T>C 
 p.His177= 
 De novo 
  
  
 GEN1329R008 
 missense_variant 
 c.607A>G 
 p.Thr203Ala 
 De novo 
  
  
 GEN1329R009 
 missense_variant 
 c.1252A>G 
 p.Thr418Ala 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
4
Duplication
 1
 
4
Deletion
 1
 
4
Deletion
 1
 
4
Deletion
 1
 
4
Deletion-Duplication
 3
 
4
Deletion
 1
 
4
Deletion-Duplication
 23
 
4
Duplication
 1
 
4
Deletion
 1
 

No Animal Model Data Available

No PIN Data Available
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