Aliases: KIAA0951
Chromosome No: Y
Chromosome Band: Yq11.221
Genetic Category: Genetic Association-Rare single gene variant-Functional
ASD Reports: 6
Recent Reports: 1
Annotated variants: 14
Associated CNVs: 14
Evidence score: 2
Associated Disorders: |
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Relevance to Autism
One study found no functional mutations in NLGN4Y in a Finnish population cohort and concluded that neuroligin mutations most probably represent rare causes of autism and that it is unlikely that the allelic variants in these genes would be major risk factors for autism (Ylisaukko-oja et al., 2005). Analysis of the coding sequences and splice junctions of the NLGN4Y gene in 335 male samples (290 with autism and 45 with intellectual disability) in Yan et al., 2008 identified a missense variant (p.Ile679Val) in a patient with autism, as well as his father with learning disabilities; this variant was not observed in 2986 control Y chromosomes. Ross et al., 2015 found that boys with 47,XYY syndrome (XYY) had increased risk of ASD behaviors on the social responsiveness scale (SRS) and increased attention deficits on the Conners' DSM-IV inattention and hyperactive scales; furthermore, peripheral expression of NLGN4Y in boys with XYY vs. typically developing controls was increased twofold in the XYY group, and results from the SRS total and autistic mannerisms scales, but not from the attention, anxiety or depression measures, correlated with peripheral expression of NLGN4Y in boys with XYY. Consistent with the hypothesis that increased NLGN4Y expression in XYY boys may contribute to ASD behaviors was the observation in Ross et al., 2019 that a male patient with the karyotype 46,X,idic(Y)(q11.22), which includes duplication of the Y short arm and proximal long arm and deletion of the distal long arm, had tall stature and cognitive function within the typical range, without autism features, as well as a two-fold increase in expression of Yp genes versus XY controls, and absent expression of deleted Yq genes, including NLGN4Y.
Molecular Function
Neuroligins are cell-adhesion molecules at the postsynaptic side of the synapse .