Summary Statistics:
ASD Reports: 19
Recent Reports: 3
Annotated variants: 25
Associated CNVs: 9
Evidence score: 2
Gene Score: S
Relevance to Autism
This gene has been associated with syndromic autism, where a subpopulation of individuals with a given syndrome develop autism. In particular, rare mutations of the NIPBL gene have been identified with Cornelia de Lange syndrome (Krantz et al., 2004).
Molecular Function
This gene encodes the homolog of the Drosophila melanogaster Nipped-B gene product and fungal Scc2-type sister chromatid cohesion proteins. It is also homologous to a family of chromosomal adherins with broad roles in sister chromatid cohesion, chromosome condensation, and DNA repair. The human protein has a bipartite nuclear targeting sequence and a putative HEAT repeat. Mutations in this gene result in Cornelia de Lange syndrome, a disorder characterized by dysmorphic facial features, growth delay, limb reduction defects, and mental retardation. Two transcript variants encoding different isoforms have been found for this gene.
References
Primary
Cornelia de Lange syndrome is caused by mutations in NIPBL, the human homolog of Drosophila melanogaster Nipped-B.
Cornelia de Lange syndrome
ASD
Positive Association
De Novo Coding Variants Are Strongly Associated with Tourette Disorder.
Tourette syndrome
Support
The combination of whole-exome sequencing and copy number variation sequencing enables the diagnosis of rare neurological disorders.
DD, ID
Support
Genetic and Phenotype Analysis of a Chinese Cohort of Infants and Children With Epilepsy
Epilepsy/seizures
Support
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD
Support
Genetic care in geographically isolated small island communities: 8 years of experience in the Dutch Caribbean
ID
Support
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Support
Diagnostic yield of next-generation sequencing in 87 families with neurodevelopmental disorders
ID
Support
High diagnostic yield of syndromic intellectual disability by targeted next-generation sequencing.
Cornelia de Lange syndrome
ID
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Absent speech, dysmorphic features
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Cornelia de Lange syndrome 1, DD
Support
Performance comparison of bench-top next generation sequencers using microdroplet PCR-based enrichment for targeted sequencing in patients with aut...
ASD
ID, epilepsy
Support
Whole genome sequencing and variant discovery in the ASPIRE autism spectrum disorder cohort.
ASD
Cornelia de Lange syndrome, DD, ID
Recent Recommendation
Diagnosis and management of Cornelia de Lange syndrome: first international consensus statement.
Cornelia de Lange syndrome
Recent Recommendation
Nipbl Interacts with Zfp609 and the Integrator Complex to Regulate Cortical Neuron Migration.
Recent Recommendation
Drosophila Nipped-B Mutants Model Cornelia de Lange Syndrome in Growth and Behavior.
GEN278R001
initiator_codon_variant
c.2T>A
p.Met1?
Familial
Multiplex
GEN278R002
frameshift_variant
c.150del
p.Asn51ThrfsTer27
De novo
GEN278R003
frameshift_variant
c.1547dup
p.Ala517CysfsTer5
De novo
GEN278R004
frameshift_variant
c.2520del
p.Arg841GlufsTer6
De novo
GEN278R005
frameshift_variant
c.3024_3028del
p.Ser1009GlyfsTer2
GEN278R006
splice_site_variant
G>T
p.?
Familial
Multiplex
GEN278R007
missense_variant
c.1553C>T
p.Thr518Ile
Unknown
Unknown
GEN278R008
missense_variant
c.4841G>C
p.Gly1614Ala
De novo
Simplex
GEN278R009
inframe_deletion
c.5689_5691del
p.Asn1897del
De novo
GEN278R010
missense_variant
c.5506G>A
p.Gly1836Ser
De novo
Simplex
GEN278R011
missense_variant
c.8242T>C
p.Trp2748Arg
De novo
Simplex
GEN278R012
missense_variant
c.7515A>C
p.Lys2505Asn
De novo
Multiplex
GEN278R013
missense_variant
c.8182G>A
p.Val2728Met
Familial
Simplex
GEN278R014
missense_variant
c.8378G>A
p.Arg2793Gln
Familial
Simplex
GEN278R015
missense_variant
c.923G>A
p.Arg308Gln
Familial
Simplex
GEN278R016
missense_variant
c.7637T>C
p.Leu2546Pro
De novo
Simplex
GEN278R017
missense_variant
c.6892C>A
p.Arg2298Ser
De novo
GEN278R018
missense_variant
c.7957C>G
p.Leu2653Val
De novo
Multiplex
GEN278R019
missense_variant
c.8270G>A
p.Arg2757His
Unknown
GEN278R020
missense_variant
c.385T>C
p.Ser129Pro
De novo
Simplex
GEN278R021
intron_variant
c.5329-15A>G
De novo
Simplex
GEN278R022
inframe_insertion
c.5778_5808+2dup
Unknown
GEN278R023
frameshift_variant
c.7816dup
p.Ile2606AsnfsTer26
De novo
GEN278R024
frameshift_variant
De novo
Simplex
GEN278R025
missense_variant
c.7790T>C
p.Leu2597Pro
De novo
Simplex
No Common Variants Available
5
Deletion-Duplication
20
No Animal Model Data Available
Summary Statistics:
Total Interactions: 18
Total Publications: 13
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Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
ARFGAP1
ADP-ribosylation factor GTPase activating protein 1
55738
Q8N6T3
IP; LC-MS/MS
Huttlin EL , et al. 2015
CBX3
chromobox homolog 3
11335
Q13185
GST
Lechner MS , et al. 2005
CBX5
chromobox homolog 5
23468
Q61686
in vitro binding assay; IP/WB; GST
Lechner MS , et al. 2005
CHD8
chromodomain helicase DNA binding protein 8
57680
Q9HCK8
CHIP-seq
Cotney J , et al. 2015
DBN1
drebrin 1
1627
Q16643
Y2H
Stelzl U , et al. 2005
FMR1
fragile X mental retardation 1
2332
G8JLE9
PAR-CLIP
Ascano M Jr , et al. 2012
HDAC1
histone deacetylase 1
3065
Q13547
Y2H; IP/WB
Jahnke P , et al. 2008
HDAC3
Histone deacetylase 3
8841
O15379
Y2H; IP/WB
Jahnke P , et al. 2008
MAU2
MAU2 chromatid cohesion factor homolog (C. elegans)
23383
Q9Y6X3
IP/WB; Y2H
Seitan VC , et al. 2006
MLLT3
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
4300
P42568
Affinity chromatography; MS
Park G , et al. 2010
PRSS23
protease, serine, 23
11098
O95084
Y2H
Stelzl U , et al. 2005
Smc1
Structural maintenance of chromosomes protein 1A
8243
Q14683
FRAP; GST; IP/WB; ATPase assay
Ladurner R , et al. 2014
Smc3
structural maintenance of chromosomes 3
9126
Q9UQE7
FRAP; GST; IP/WB; ATPase assay
Ladurner R , et al. 2014
TOP3B
topoisomerase (DNA) III beta
8940
O95985
HITS-CLIP
Xu D , et al. 2013
HBB
hemoglobin, beta adult major chain
15129
P02088
ChIP
Chien R , et al. 2011
Khdrbs3
KH domain containing, RNA binding, signal transduction associated 3
13992
Q9R226
RNA-Seq
Traunmller L , et al. 2016
CUX1
cut
44540
P10180
ChIP
Misulovin Z , et al. 2007
HOXA9
Abdominal B
47763
P09087
ChIP
Misulovin Z , et al. 2007