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Relevance to Autism

This gene was identified by TADA (transmission and de novo association) analysis of a combined dataset from the Simons Simplex Collection (SSC) and the Autism Sequencing Consortium (ASC) as a gene strongly enriched for variants likely to affect ASD risk with a false discovery rate (FDR) of <0.1 (Sanders et al., 2015); among the variants identified in this gene was one de novo loss-of-function (LoF) variant.

Molecular Function

The protein encoded by this gene is involved in the microtubule organization in interphase cells. Overexpression induces the fragmentation of the Golgi, and causes lysosomes to disperse toward the cell periphery; it also interferes with mitotic spindle assembly

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Phenotype-to-genotype approach reveals head-circumference-associated genes in an autism spectrum disorder cohort.
ASD
Macrocephaly
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Both rare and common genetic variants contribute to autism in the Faroe Islands.
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN766R001 
 stop_gained 
 c.1951A>T 
 p.Lys651Ter 
 De novo 
  
 Simplex 
 GEN766R002 
 intron_variant 
 c.1170-49T>G 
  
 De novo 
  
  
 GEN766R003 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN766R004 
 splice_site_variant 
 c.2535+1G>A 
  
 Familial 
 Maternal 
 Multiplex 
 GEN766R005 
 stop_gained 
 c.2092C>T 
 p.Gln698Ter 
 Familial 
 Paternal 
 Simplex 
 GEN766R006 
 missense_variant 
 c.3656G>T 
 p.Trp1219Leu 
 Unknown 
  
  
 GEN766R007 
 missense_variant 
 c.3285G>T 
 p.Leu1095Phe 
 De novo 
  
  
 GEN766R008 
 missense_variant 
 c.2050G>A 
 p.Glu684Lys 
 De novo 
  
  
 GEN766R009 
 synonymous_variant 
 c.285C>T 
 p.Ser95%3D 
 De novo 
  
  
 GEN766R010 
 stop_gained 
 c.3349C>T 
 p.Gln1117Ter 
 Familial 
 Maternal 
  
 GEN766R011 
 stop_gained 
 c.2201+2078C>T 
  
 Familial 
 Paternal 
 Multiplex (monozygotic twins) 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
20
Deletion-Duplication
 13
 
20
Duplication
 5
 
20
Duplication
 1
 
20
Duplication
 1
 
20
Duplication
 1
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
ACAD11 Acyl-CoA dehydrogenase family member 11 84129 Q709F0 EPASIS
Dona M , et al. 2015
ACTR10 actin-related protein 10 homolog (S. cerevisiae) 55860 Q9NZ32 TAP; LC-MS/MS; EPASIS
Dona M , et al. 2015
ACTR1A ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) 10121 P61163 TAP; LC-MS/MS; EPASIS
Dona M , et al. 2015
ACTR1B ARP1 actin-related protein 1 homolog B, centractin beta (yeast) 10120 P42025 TAP; LC-MS/MS; EPASIS
Dona M , et al. 2015
ATAD3A ATPase family, AAA domain containing 3A 55210 Q9NVI7 EPASIS
Dona M , et al. 2015
BIRC6 baculoviral IAP repeat containing 6 57448 Q9NR09 EPASIS
Dona M , et al. 2015
C10ORF96 Coiled-coil domain-containing protein 172 374355 P0C7W6 IP; LC-MS/MS
Huttlin EL , et al. 2015
CAMK2A calcium/calmodulin-dependent protein kinase II alpha 815 Q9UQM7 TAP; LC-MS/MS
Dona M , et al. 2015
CAMK2D calcium/calmodulin-dependent protein kinase II delta 817 Q13557 TAP; LC-MS/MS
Dona M , et al. 2015
CAMK2G calcium/calmodulin-dependent protein kinase II gamma 818 Q13555 TAP; LC-MS/MS
Dona M , et al. 2015
CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 829 P52907 TAP; LC-MS/MS; EPASIS
Dona M , et al. 2015
CAPZA2 capping protein (actin filament) muscle Z-line, alpha 2 830 P47755 TAP; LC-MS/MS
Dona M , et al. 2015
CAPZB capping protein (actin filament) muscle Z-line, beta 832 P47756 TAP; LC-MS/MS; EPASIS
Dona M , et al. 2015
CEP170 centrosomal protein 170kDa 9859 Q5SW79 EPASIS
Dona M , et al. 2015
CLIP1 CAP-GLY domain containing linker protein 1 6249 P30622 EPASIS
Dona M , et al. 2015
DCTN1 dynactin 1 1639 Q14203 TAP; LC-MS/MS; EPASIS
Dona M , et al. 2015
DCTN2 dynactin 2 (p50) 10540 Q13561 TAP; LC-MS/MS; EPASIS
Dona M , et al. 2015
DCTN3 dynactin subunit 3 11258 O75935 TAP; LC-MS/MS; EPASIS
Dona M , et al. 2015
DCTN4 dynactin 4 (p62) 51164 Q9UJW0 TAP; LC-MS/MS; EPASIS
Dona M , et al. 2015
DCTN5 dynactin 5 (p25) 84516 Q9BTE1 EPASIS
Dona M , et al. 2015
DCTN6 dynactin 6 10671 O00399 TAP; LC-MS/MS
Dona M , et al. 2015
DNAJA1 DnaJ (Hsp40) homolog, subfamily A, member 1 3301 P31689 EPASIS
Dona M , et al. 2015
DYNC1H1 dynein, cytoplasmic 1, heavy chain 1 1778 Q14204 TAP; LC-MS/MS; EPASIS
Dona M , et al. 2015
DYNC1I2 dynein, cytoplasmic 1, intermediate chain 2 1781 Q13409 TAP; LC-MS/MS; EPASIS
Dona M , et al. 2015
DYNC1LI1 dynein, cytoplasmic 1, light intermediate chain 1 51143 Q9Y6G9 TAP; LC-MS/MS; EPASIS
Dona M , et al. 2015
DYNC1LI2 dynein, cytoplasmic 1, light intermediate chain 2 1783 O43237 TAP; LC-MS/MS; EPASIS
Dona M , et al. 2015
DYNLRB1 dynein, light chain, roadblock-type 1 83658 Q9NP97 TAP; LC-MS/MS
Dona M , et al. 2015
DZANK1 double zinc ribbon and ankyrin repeat domains 1 55184 Q9NVP4 Y2H; IP/WB; IP; LC-MS/MS; Co-localization
Dona M , et al. 2015
LZTS2 leucine zipper, putative tumor suppressor 2 84445 Q9BRK4 Y2H
Rual JF , et al. 2005
MARK2 MAP/microtubule affinity-regulating kinase 2 2011 Q7KZI7 EPASIS
Dona M , et al. 2015
MRPS27 mitochondrial ribosomal protein S27 23107 Q92552 EPASIS
Dona M , et al. 2015
MRPS34 mitochondrial ribosomal protein S34 65993 P82930 IP; LC-MS/MS
Huttlin EL , et al. 2015
NKAP NFKB activating protein 79576 Q8N5F7 IP; LC-MS/MS
Huttlin EL , et al. 2015
PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) 5048 P43034 EPASIS
Dona M , et al. 2015
PRPF19 PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) 27339 Q9UMS4 EPASIS
Dona M , et al. 2015
RBM14 RNA binding motif protein 14 10432 Q96PK6 EPASIS
Dona M , et al. 2015
RGS2 regulator of G-protein signaling 2, 24kDa 5997 P41220 IP; LC-MS/MS
Huttlin EL , et al. 2015
SMC4 structural maintenance of chromosomes 4 10051 Q9NTJ3 EPASIS
Dona M , et al. 2015
SYT17 synaptotagmin XVII 51760 Q9BSW7 Y2H
Rual JF , et al. 2005
TPM2 Tropomyosin beta chain 7169 P07951-2 IP; LC-MS/MS
Huttlin EL , et al. 2015
TSC1 tuberous sclerosis 1 7248 Q92574 Y2H
Sakai Y , et al. 2011
ZNF408 zinc finger protein 408 79797 B4DXY4 IP; LC-MS/MS
Huttlin EL , et al. 2015

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