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Relevance to Autism

Neurofibromatosis is a Mendelian disease associated with autism. There is some association and linkage evidence implicating it in idiopathic autism, including positive association that was found with a NF1 polymorphism in the Japanese population (Marui et al., 2004). Chisholm et al., 2022 analyzed a study cohort of 68 children (3-15 years) with neurofibromatosis type I (NF1) who had scored above threshold on the Social Responsiveness Scale-Second Edition (T-score 60; 51% larger cohort) and completed the Autism Diagnostic Interview-Revised (ADI-R) and/or the Autism Diagnostic Observation Schedule-Second Edition (ADOS-2) and found that 63% met the ADOS-2 'autism spectrum' cut-off, while 34% exceeded the more stringent threshold for 'autistic disorder' on the ADI-R. Large-scale whole-exome and whole-genome seqeuncing studies have identified de novo variants in ASD probands from the Simons Simplex Collection, the Autism Sequencing Consortium, the MSSNG cohort, and the SPARK cohort (Sanders et al., 2012; Iossifov et al., 2014; Zhou et al., 2022). A two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in Zhou et al., 2022 identified NF1 as a gene reaching exome-wide significance (P < 2.5E-06).

Molecular Function

The encoded protein has Ras GTPase activity and appears to be a negative regulator of cell proliferation.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Association between the neurofibromatosis-1 (NF1) locus and autism in the Japanese population.
ASD
Negative Association
Lack of association of the (AAAT)6 allele of the GXAlu tetranucleotide repeat in intron 27b of the NF1 gene with autism.
ASD
Negative Association
Association study of the NF1 gene and autistic disorder.
ASD
Support
Clinical Targeted Panel Sequencing Analysis in Clinical Evaluation of Children with Autism Spectrum Disorder in China
ASD
Support
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
ASD
Support
Early-onset epileptic encephalopathy and severe developmental delay in an association with de novo double mutations in NF1 and MAGEL2.
Neurofibromatosis type 1
DD, epilepsy/seizures
Support
Genetic and Phenotype Analysis of a Chinese Cohort of Infants and Children With Epilepsy
Epilepsy/seizures
Support
De novo mutations revealed by whole-exome sequencing are strongly associated with autism.
ASD
Support
ASD
DD, ID
Support
High Rate of Recurrent De Novo Mutations in Developmental and Epileptic Encephalopathies.
Epilepsy/seizures
DD/ID
Support
Genetic care in geographically isolated small island communities: 8 years of experience in the Dutch Caribbean
DD
Support
Neurofibromatosis type I, ASD
Support
Clinical exome sequencing: results from 2819 samples reflecting 1000 families.
Hypotonia
ASD
Support
Behavioural and psychological features of PTEN mutations: a systematic review of the literature and meta-analysis of the prevalence of autism spectrum disorder characteristics
Neurofibromatosis type I
ASD
Support
ASD
ID, learning disability
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Palsy, motor neuron atrophy, muscle weakness
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
ASD
Support
Loss of NF1 in Drosophila Larvae Causes Tactile Hypersensitivity and Impaired Synaptic Transmission at the Neuromuscular Junction
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Neurofibromatosis type I
Support
A novel RAB39B mutation and concurrent de novo NF1 mutation in a boy with neurofibromatosis type 1, intellectual disability, and autism: a case report
Neurofibromatosis type 1
ASD, ID, epilepsy/seizures
Support
Genome-wide rare variant score associates with morphological subtypes of autism spectrum disorder
ASD
Neurofibromatosis type I
Support
Exome sequencing in multiplex autism families suggests a major role for heterozygous truncating mutations.
ASD
Support
DD
Support
Targeted resequencing of 358 candidate genes for autism spectrum disorder in a Chinese cohort reveals diagnostic potential and genotype-phenotype c...
ASD
Highly Cited
The NF1 locus encodes a protein functionally related to mammalian GAP and yeast IRA proteins.
Highly Cited
Mechanism for the learning deficits in a mouse model of neurofibromatosis type 1.
Recent Recommendation
Prevalence of Autism Spectrum Disorder symptoms in children with neurofibromatosis type 1.
Recent Recommendation
Neurofibromin regulation of ERK signaling modulates GABA release and learning.
Recent Recommendation
Neurofibromatosis type 1 and autism spectrum disorder.
Recent Recommendation
Neurofibromin is a novel regulator of RAS-induced signals in primary vascular smooth muscle cells.
Recent Recommendation
Autism traits in the RASopathies.
Neurofibromatosis type 1
Autistic features
Recent Recommendation
Autism and other psychiatric comorbidity in neurofibromatosis type 1: evidence from a population-based study.
Recent Recommendation
ERK inhibition rescues defects in fate specification of Nf1-deficient neural progenitors and brain abnormalities.
Recent Recommendation
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Behavioural and cognitive phenotypes in children with neurofibromatosis type 1 (NF1): the link with the neurobiological level.
Recent Recommendation
Cerebral volumetric abnormalities in Neurofibromatosis type 1: associations with parent ratings of social and attention problems, executive dysfunc...
Recent Recommendation
Aberrant expression of synaptic plasticity-related genes in the NF1 mouse hippocampus.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN169R001 
 microsatellite 
  
  
  
  
  
 GEN169R002 
 missense_variant 
 c.7375C>A 
 p.His2459Asn 
 De novo 
  
 Simplex 
 GEN169R003 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Unknown 
 GEN169R004 
 missense_variant 
 c.7910G>A 
 p.Arg2637Gln 
 Familial 
 Paternal 
 Multiplex 
 GEN169R005 
 missense_variant 
 c.5425C>T 
 p.Pro1809Ser 
 De novo 
  
 Simplex 
 GEN169R006 
 stop_gained 
 c.3449C>G 
 p.Ser1150Ter 
 De novo 
  
 Simplex 
 GEN169R007 
 missense_variant 
 c.107C>G 
 p.Thr36Ser 
 Familial 
 Maternal 
  
 GEN169R008 
 stop_gained 
 c.5327C>A 
 p.Ser1776Ter 
 De novo 
  
 Simplex 
 GEN169R009 
 stop_gained 
 c.6792C>G 
 p.Tyr2264Ter 
 De novo 
  
 Simplex 
 GEN169R010 
 splice_site_variant 
 c.4772+1G>T 
  
 De novo 
  
  
 GEN169R011 
 frameshift_variant 
 c.1742dup 
 p.Cys582LeufsTer6 
 Familial 
 Maternal 
  
 GEN169R012 
 frameshift_variant 
 c.1742dup 
 p.Cys582LeufsTer6 
 Familial 
 Maternal 
  
 GEN169R013 
 frameshift_variant 
 c.1742dup 
 p.Cys582LeufsTer6 
 Familial 
 Maternal 
  
 GEN169R014 
 splice_site_variant 
 c.6579+2T>C 
  
 De novo 
  
 Extended multiplex 
 GEN169R015 
 splice_site_variant 
 c.888+2T>G 
  
 De novo 
  
 Simplex 
 GEN169R016 
 missense_variant 
 c.4267A>G 
 p.Lys1423Glu 
 Unknown 
  
  
 GEN169R017 
 missense_variant 
 c.1885G>A 
 p.Gly629Arg 
 De novo 
  
  
 GEN169R018 
 frameshift_variant 
 c.701del 
 p.Leu234ArgfsTer47 
 Unknown 
  
  
 GEN169R019 
 splice_site_variant 
 c.731-1G>T 
  
 Unknown 
  
  
 GEN169R020 
 missense_variant 
 c.5794C>G 
 p.Leu1932Val 
 De novo 
  
  
 GEN169R021 
 stop_gained 
 c.6930T>A 
 p.Pro2310%3D 
 De novo 
  
  
 GEN169R022 
 splice_site_variant 
 c.7000-1G>C 
  
 De novo 
  
  
 GEN169R023 
 synonymous_variant 
 c.4143C>T 
 p.Ile1381%3D 
 De novo 
  
 Multiplex 
 GEN169R024 
 splice_site_variant 
 c.4772+2T>C 
  
 De novo 
  
 Simplex 
 GEN169R025 
 frameshift_variant 
 c.5754del 
 p.Asn1918LysfsTer7 
 De novo 
  
 Simplex 
 GEN169R026 
 frameshift_variant 
 c.653_654delinsT 
 p.Lys218MetfsTer7 
 De novo 
  
  
 GEN169R027 
 missense_variant 
 c.2684T>G 
 p.Met895Arg 
 De novo 
  
  
 GEN169R028 
 frameshift_variant 
 c.3938_3941del 
 p.Asp1313GlyfsTer13 
 De novo 
  
  
 GEN169R029 
 stop_gained 
 c.6792C>A 
 p.Tyr2264Ter 
 De novo 
  
  
 GEN169R030 
 synonymous_variant 
 c.7470C>T 
 p.Val2490%3D 
 De novo 
  
  
 GEN169R031 
 frameshift_variant 
 c.7622_7623del 
 p.Gly2541AspfsTer14 
 De novo 
  
  
 GEN169R032 
 missense_variant 
 c.8164C>G 
 p.Leu2722Val 
 De novo 
  
  
 GEN169R033 
 stop_gained 
 c.1246C>T 
 p.Arg416Ter 
 De novo 
  
  
 GEN169R034 
 splice_site_variant 
 c.3496+2T>G 
  
 De novo 
  
  
 GEN169R035 
 splice_site_variant 
 c.4207G>T 
 p.Ala1403Ser 
 De novo 
  
  
 GEN169R036 
 missense_variant 
 c.4562T>G 
 p.Leu1521Arg 
 De novo 
  
  
 GEN169R037 
 missense_variant 
 c.7163C>T 
 p.Thr2388Ile 
 De novo 
  
  
 GEN169R038 
 stop_gained 
 c.7846C>T 
 p.Gln2616Ter 
 De novo 
  
  
 GEN169R039 
 missense_variant 
 c.3089C>T 
 p.Ser1030Leu 
 Familial 
 Paternal 
  
 GEN169R040 
 frameshift_variant 
 c.7996_7997del 
 p.Asn2666HisfsTer26 
 Familial 
 Maternal 
  
 GEN169R041 
 splice_site_variant 
 c.6938del 
 p.Gly2313ValfsTer12 
 Familial 
 Maternal 
  
 GEN169R042 
 frameshift_variant 
 c.499_502del 
 p.Cys167GlnfsTer10 
 Familial 
 Paternal 
 Simplex 
 GEN169R043 
 splice_site_variant 
 c.7395-2A>T 
 p.? 
 De novo 
  
  
 GEN169R044 
 stop_gained 
 c.2041C>T 
 p.Arg681Ter 
 De novo 
  
 Simplex 
 GEN169R045 
 missense_variant 
 c.8188C>T 
 p.Leu2730Phe 
 Unknown 
  
 Simplex 
 GEN169R046 
 splice_site_variant 
 c.3113+1G>A 
  
 Familial 
 Paternal 
 Multiplex 
  et al.  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN169C001 
 microsatellite, intron_variant 
  
 N/A 
 N/A 
 Japanese ASD cases (n = 74) and controls (n = 122) 
 Discovery 
 GEN169C002 
 microsatellite, intron_variant 
  
 N/A 
 N/A 
 Japanese ASD cases (n = 74) and controls (n = 122) 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Duplication
 2
 
17
Deletion-Duplication
 27
 
17
Deletion
 2
 
17
Deletion-Duplication
 74
 

Model Summary

New roles for NF1 in development and indicate that some of the abnormal growth phenomena observed in NF1 patients can be recapitulated in neurofibromin deficient mice.

References

Type
Title
Author, Year
Additional
Learning deficits, but normal development and tumor predisposition, in mice lacking exon 23a of Nf1.
Additional
Ablation of NF1 function in neurons induces abnormal development of cerebral cortex and reactive gliosis in the brain.
Additional
Neurofibromin is required for barrel formation in the mouse somatosensory cortex.
Additional
Social learning and amygdala disruptions in Nf1 mice are rescued by blocking p21-activated kinase.
Additional
Tumour predisposition in mice heterozygous for a targeted mutation in Nf1.
Primary
Targeted disruption of the neurofibromatosis type-1 gene leads to developmental abnormalities in heart and various neural crest-derived tissues.

M_NF1_6_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Targeted deletion of exon 23a from Nf1 gene.
Allele Type: Targeted (Knock-Out)
Strain of Origin: C57BL/6J
Genetic Background: Not Specified
ES Cell Line: CJ.7
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_NF1_7_KO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Targeted deletion of exon 23a from Nf1 gene.
Allele Type: Targeted (Knock-Out)
Strain of Origin: C57BL/6J
Genetic Background: Not Specified
ES Cell Line: CJ.7
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_NF1_6_CKO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Conditional deletion of exons 31 and 32 of Nf1 gene using Synapsin1-cre in neurons, authors report lack of cre recombinase activity in Purkinje neurons which cause persistent expression of the protein neurofibromin
Allele Type:
Strain of Origin: C57BL/6
Genetic Background: C57BL/6
ES Cell Line: Not Specified
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_NF1_5_CKO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Conditional deletion of exons 31 and 32 of Nf1 gene using hGFAP-cre in neurons and glia of the cortex
Allele Type: Conditional loss-of-function
Strain of Origin: null
Genetic Background: null
ES Cell Line: null
Mutant ES Cell Line: null
Model Source: null

M_NF1_4_KO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Targeted disruption of exon 31 of the Nf1 gene.
Allele Type: targeted (Null mutation)
Strain of Origin: 129/sv
Genetic Background: C57BL/6
ES Cell Line: D3
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_NF1_3_N31_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Targeted disruption of exon 31 of the Nf1 gene.
Allele Type: Targeted (Null mutation)
Strain of Origin: 129/sv
Genetic Background: C57BL/6
ES Cell Line: D3
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_NF1_1_NLM_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Targeted null mutation in exon 31 of Nf1 gene.
Allele Type: Targeted (Null mutation)
Strain of Origin: C57BL/6J
Genetic Background: C57BL/6J; 129/SvJ
ES Cell Line: CCE
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_NF1_2_NLM_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Targeted null mutation in exon 31 of Nf1 gene.
Allele Type: Targeted (Null mutation)
Strain of Origin: C57BL/6J
Genetic Background: C57BL/6J; 129/SvJ
ES Cell Line: CCE
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_NF1_6_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Spatial learning1
Abnormal
Description: Abnormal spatial learning
Exp Paradigm: Hidden platform test for spatial memory and navigation.
 Morris water maze test
 Unreported
Cued or contextual fear conditioning: context discrimination1
Abnormal
Description: Abnormal contextual discrimination
Exp Paradigm: Discrimination between two similar chambers with the mice receiving a foot shock in one chamber
 NA
 Unreported
Developmental trajectory1
 No change
 General observations
 Unreported
Protein expression level evidence1
 No change
 Western blot
 Unreported
Regulation of gene expression1
 No change
 Quantitative pcr (qrt-pcr)
 Unreported
Motor coordination and balance1
 No change
 Accelerating rotarod test
 Unreported
Motor coordination and balance1
 No change
 Accelerating rotarod test
 Unreported
Brain morphology1
 No change
 Histology
 Unreported
Vision1
 No change
 Morris water maze test
 Unreported
Vision1
 No change
 Morris water maze test
 Unreported
Social transmission of food preference1
 No change
 NA
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Maternal behavior, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure

M_NF1_7_KO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Developmental trajectory1
 No change
 General observations
 Unreported
Protein expression level evidence1
 No change
 Western blot
 Unreported
Regulation of gene expression1
 No change
 Quantitative pcr (qrt-pcr)
 Unreported
Brain morphology1
 No change
 Histology
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_NF1_6_CKO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Brain morphology1
Abnormal
Description: Decreased cortical thickness, increase in cell density of cerebral cortex, no change in total cell and neuron number in cortex; no change in hippocampus and hindbrain morphology
Exp Paradigm: Histological analysis followed by morphometric analysis of serial coronal sections of brains. h&e counts and neun staining counts
 Histology
 Unreported
Brain size1
Decreased
Description: Limited reduction in brain size limited to forebrain
Exp Paradigm: Weight analysis
 Pathology
 Unreported
Brain size1
Decreased
Description: Decreased brain size limited to forebrain
Exp Paradigm: Weight analysis
 Pathology
 Unreported
Brain morphology1
Decreased
Description: Reduction in cortical thickness, increase in cell density, no change in total cell and neuron number
Exp Paradigm: Histological analysis followed by morphometric analysis of serial coronal sections of brains. h&e counts and neun staining counts
 Histology
 Unreported
Developmental trajectory1
Abnormal
Description: Growth retardation; reduction in body weight and size with appropriate reduction in organs size/weight; no evidence of tumor appearance
Exp Paradigm: General observations
 General observations
 P3-p4, 14 months
Developmental trajectory1
Abnormal
Description: Growth retardation from 3 to 4 days after birth sustained into adulthood; reduction in both weight and size; no evidence of tumor appearance
Exp Paradigm: General observations
 General observations
 P3-p4, 14 months
Protein expression level evidence1
Decreased
Description: Complete lack of nf1 protein expression
Exp Paradigm: Nf1 protein expression
 Immunohistochemistry
 Unreported
Protein expression level evidence1
Decreased
Description: Absence of nf1 protein expression
Exp Paradigm: Nf1 protein expression
 Immunohistochemistry
 Unreported
Signaling1
Increased
Description: Increased levels of downstream signaling component p-erk in layers ii/iii and vi of cerebral cortex
Exp Paradigm: Downstream signaling activation
 Western blot
 Unreported
Protein expression level evidence1
Increased
Description: Increased astrocyte protein, astrogliosis throughout cerebral cortex, hippocampus, and brainstem; hypertrophic astrocytes with increased processes
Exp Paradigm: Astrocyte specific protein expression
 Immunohistochemistry
 Unreported
Cell proliferation1
 No change
 NA
 P0-p3, 5 months
Dendritic architecture: spine density1
 No change
 Golgi-cox staining
 Unreported
Neuronal differentiation1
 No change
 NA
 Unreported
Apoptosis: brain cells1
 No change
 Tunel assay
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_NF1_5_CKO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Brain morphology1
Abnormal
Description: Abnormal morphology of individual patches of brain slices with reduction in size and increase in width of septa between patches
Exp Paradigm: Cytochrome oxidase staining of brain sections
 Cytochrome oxidase staining
 5 weeks
Brain morphology1
Abnormal
Description: Abnormal morphology demonstrated by decreased patterning of cortical cells into barrels
Exp Paradigm: NA
 NA
 Unreported
Cortical lamination1
Decreased
Description: Decreased patterning of cortical cells into barrels; reduced cellular aggregation throughout the entire somatosensory area
Exp Paradigm: Dapi staining of coronal or tangential sections of cortex
 Nuclear staining
 Unreported
Brain morphology1
Decreased
Description: Decreased size of individual patches; decreased distribution of ring-like nuclei
Exp Paradigm: Dapi staining of tangential sections across the pmbsf area
 Nuclear staining
 P4, p10
Protein modification process1
Increased
Description: Increased levels of phospho-erk in cortex
Exp Paradigm: Phospho-erk expression levels
 Western blot
 P0, p4
Protein expression level evidence1
Decreased
Description: Decreased expression of nf1 in somatosensory cortex tissue extracts
Exp Paradigm: Nf1 protein expression
 Western blot
 P0, p4
Protein expression level evidence1
 No change
 Western blot
 P0, p4
Protein expression level evidence1
 No change
 Western blot
 P0, p4
Brain morphology1
 No change
 Cytochrome oxidase staining
 5 weeks
Brain morphology1
 No change
 NA
 Unreported
Brain size1
 No change
 Nuclear staining
 P4-p35
Somatosensory cortical map architecture1
 No change
 Immunohistochemistry
 P4
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_NF1_4_KO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Miniature post synaptic current frequency: inhibitory1
Increased
Description: Increased frequency of mipscs
Exp Paradigm: Whole-cell patch clamp: pyramidal neurons of the basolateral amygdala (bla)
 Whole-cell patch clamp
 2-3 months
Synaptic plasticity1
Decreased
Description: Impaired long term potentiation in the bla, 50 minutes after tbs stimulation
Exp Paradigm: Whole-cell patch clamp: current-clamp mode in pyramidal cells of the basolateral amygdala (bla); long term potentiation (ltp) using theta burst stimulation
 Whole-cell patch clamp
 2-3 months
Miniature post synaptic current frequency: excitatory1
Increased
Description: Increased frequency of mepscs
Exp Paradigm: Whole-cell patch clamp: pyramidal neurons of the basolateral amygdala (bla)
 Whole-cell patch clamp
 2-3 months
Spontaneous post synaptic events: inhibitory currents1
Increased
Description: Increased frequency of sipscs, but no change in amplitude
Exp Paradigm: Whole-cell patch clamp: pyramidal neurons of the basolateral amygdala (bla)
 Whole-cell patch clamp
 2-3 months
Spontaneous post synaptic events: excitatory currents1
Increased
Description: Increased frequency of sepscs, but no change in amplitude
Exp Paradigm: Whole-cell patch clamp: pyramidal neurons of the basolateral amygdala (bla)
 Whole-cell patch clamp
 2-3 months
Social memory1
Decreased
Description: Decreased preference for novel mouse at 24-hour test, although short-term social memory (10-minute test) was not affected
Exp Paradigm: NA
 Reciprocal social interaction test
 Adult
Developmental trajectory2
Increased
Description: Increased rate of tumorigenesis; neurofibrosarcoma, adrenal tumor, pheochromocytoma, myeloid leukemia
Exp Paradigm: Histopathalogical analysis
 Histology
 27 months
Developmental trajectory2
Increased
Description: Increased rate of tumorigenesis especially onces linked with human disease: neurofibrosarcoma, adrenal tumor, pheochromocytoma, myeloid leukemia
Exp Paradigm: Histopathalogical analysis
 Histology
 27 months
Loss of heterozygosity (loh)2
Decreased
Description: Loss of wild-type allele in dna from tumor
Exp Paradigm: Loss of heterozygosity (loh) analysis
 Southern blot
 Unreported
Protein expression level evidence2
Decreased
Description: Nf1 protein expression approximately halved
Exp Paradigm: Nf1 protein expression
 NA
 Unreported
Loss of heterozygosity (loh)2
Decreased
Description: Loss of wild-type allele
Exp Paradigm: Loss of heterozygosity (loh) analysis
 Southern blot
 Unreported
Protein expression level evidence1
Decreased
Description: Decreased number of adam22 immunoreactive cells in the bla, although no change in number of immunoreactive cells for cap1 or hsp70
Exp Paradigm: Immunohistochemistry: adam22 antibody
 Immunohistochemistry
 Adult
Targeted expression2
Decreased
Description: Decreased nf1 protein expression
Exp Paradigm: Nf1 protein expression
 Immunoprecipitation
 Unreported
Protein expression level evidence1
Abnormal
Description: Altered expression of 73 proteins in neurons from basolateral amygdala, compared to wild type, out of 380 proteins assessed
Exp Paradigm: Liquid chromatography-mass spectrometry (lc-ms)
 Liquid chromatography-mass spectrometry (lc-ms)
 Adult
Protein phosphorylation1
Increased
Description: Increased number of immunoreactive phospho-erk cells in the basolateral amygdala (bla), compared to wild type, but not in the medial amygdala, 80 minutes after exposure to a novel mouse
Exp Paradigm: Immunohistochemistry: phospho-erk antibodies; reciprocal social interaction test with novel mouse
 Immunohistochemistry
 Adult
Anxiety1
 No change
 Elevated plus maze test
 Adult
Depression1
 No change
 Forced swim test
 Adult
Cued or contextual fear conditioning: passive avoidance1
 No change
 Passive avoidance test
 Adult
Object recognition memory1
 No change
 Novel object recognition test
 Adult
Gene expression2
 No change
 Northern blot
 Unreported
Gene expression2
 No change
 Northern blot
 Unreported
Miniature post synaptic current amplitude: excitatory1
 No change
 Whole-cell patch clamp
 2-3 months
Miniature post synaptic current amplitude: inhibitory1
 No change
 Whole-cell patch clamp
 2-3 months
Olfaction1
 No change
 Olfactory discrimination test
 Adult
Social approach1
 No change
 Reciprocal social interaction test
 Adult
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_NF1_3_N31_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Mortality/lethality1
Increased
Description: Embryonic lethal between 12.5-14 days of gestation
Exp Paradigm: General observations
 General observations
 E12.5-e14
Cardiovascular development and function1
Abnormal
Description: Abnormal great vessels: double outlet right ventricle; increased cell density of great vessel lining; distended pericardial sacs; thinner myocardium
Exp Paradigm: Gross dissection and histological analysis
 Histology
 E13.5
Targeted expression1
Decreased
Description: Absence of full length nf1 protein
Exp Paradigm: Nf1 protein expression
 Immunoprecipitation
 Unreported
Protein expression level evidence1
Decreased
Description: Lack of full-length neurofibromin
Exp Paradigm: Nf1 protein expression
 NA
 Unreported
Cardiovascular development and function1
 No change
 Macroscopic analysis
 E13.5
General characteristics1
 No change
 Macroscopic analysis
 Unreported
General characteristics1
 No change
 Macroscopic analysis
 Unreported
Gene expression1
 No change
 Northern blot
 E12.5
Gene expression1
 No change
 Northern blot
 E12.5
Brain morphology1
 No change
 Histology
 Unreported
Brain morphology1
 No change
 Histology
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_NF1_1_NLM_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Brain development1
Abnormal
Description: Hyperplasia of prevertebral and paravertebral sympathetic ganglia
Exp Paradigm: Hematoxylin and eosin staining of sagittal sections of sympathetic ganglia
 Histology
 E13.5
Brain morphology1
Increased
Description: Increased cell number in paravertebral sympathetic chains and superior cervical ganglia
Exp Paradigm: Dissociation of chains and culturing of neurons for 24 hrs
 NA
 E12.5
Brain morphology1
Increased
Description: 50% increase in mitotic index in sympathetic ganglia
Exp Paradigm: Numeration of mitotic figures on h + e stained slides of sympathetic ganglia
 NA
 Unreported
Brain development1
Abnormal
Description: Hyperplasia of prevertebral and paravertebral sympathetic ganglia; large cell bodies with big nuclei, prominent nucleoli, fine dendritic morphology
Exp Paradigm: Hematoxylin and eosin staining of sagittal sections of sympathetic ganglia
 Histology
 E13.5
Brain morphology1
Increased
Description: Increased mitotic index in sympathetic ganglia
Exp Paradigm: Numeration of mitotic figures on h + e stained slides of sympathetic ganglia
 Cell counting
 Unreported
Cardiovascular development and function1
Abnormal
Description: Significant ventricular septal defect; less developed interventricular septum (ivs); unseperated pulmonary artery and aorta at the right ventricle
Exp Paradigm: Hematoxylin and eosin staining of sagittal sections of heart
 Histology
 E13.5
Mortality/lethality1
Increased
Description: Embryonic lethal by 14.5 days in development
Exp Paradigm: Histological analysis of embryos
 Histology
 E11.5-e14.5
Cardiovascular development and function1
Abnormal
Description: Significant ventricular septal defect; less developed interventricular septum (ivs); un-separated pulmonary artery and aorta at the right ventricle
Exp Paradigm: Hematoxylin and eosin staining of sagittal sections of heart
 Histology
 E13.5
Developmental trajectory1
Abnormal
Description: Hypoplasia of liver with focal necrosis and hemorrhage; hypoplastic skeletal muscle; thinner musculature of stomach and abdominal muscle
Exp Paradigm: Hematoxylin and eosin staining of sagittal sections of liver, skeletal muscle, and stomach and abdominal muscles
 Histology
 E13.5
Cardiovascular development and function1
Abnormal
Description: Globular, hypoplastic hearts; disoriented and poorly developed myocardial fibers; significant ventricular septal defect
Exp Paradigm: Hematoxylin and eosin staining of sagittal sections of heart
 Histology
 E13.5
Developmental trajectory1
Abnormal
Description: Enlarged head, chest bulge, pale liver, small eyes
Exp Paradigm: General observations
 General observations
 E13.5
Cardiovascular development and function1
Abnormal
Description: Abnormal cardiac valves: atrioventricular canal lacked cellular density; loose, myxoid appearance of endocardial cushion
Exp Paradigm: Hematoxylin and eosin staining of sagittal sections of heart
 Histology
 E13.5
Protein expression level evidence1
Decreased
Description: No nf1 protein detected
Exp Paradigm: Nf1 protein expression
 Western blot
 Unreported
Gene expression1
Decreased
Description: Weak signal of nf1 rna detected
Exp Paradigm: Nf1 rna expression
 Quantitative pcr (qrt-pcr)
 Unreported
Gene expression1
Decreased
Description: No nf1 rna transcripts detected
Exp Paradigm: Nf1 rna expression
 Northern blot
 Unreported
Brain development1
 No change
 Histology
 E11.5-e13.5
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_NF1_2_NLM_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Protein expression level evidence1
Decreased
Description: Reduced level of nf1 protein expression
Exp Paradigm: Nf1 protein expression
 Western blot
 Unreported
Cardiovascular development and function1
 No change
 Histology
 E13.5
General characteristics1
 No change
 General observations
 10 months
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
APP amyloid beta (A4) precursor protein 351 P05067 Y2H; IP/WB
De Schepper S , et al. 2005
C19ORF75 SIGLEC family-like protein 1 284369 Q8N7X8 IP; LC-MS/MS
Huttlin EL , et al. 2015
CA14 Carbonic anhydrase 14 23632 Q9ULX7 IP; LC-MS/MS
Huttlin EL , et al. 2015
CD79B B-cell antigen receptor complex-associated protein beta chain 974 P40259-2 IP; LC-MS/MS
Huttlin EL , et al. 2015
DNAJC7 DnaJ (Hsp40) homolog, subfamily C, member 7 7266 Q99615 Y2H
Murthy AE , et al. 1996
EFS embryonal Fyn-associated substrate 10278 O43281 Y2H
Sakai Y , et al. 2011
EPHA1 EPH receptor A1 2041 P21709 IP; LC-MS/MS
Huttlin EL , et al. 2015
FAM174A Membrane protein FAM174A 345757 Q8TBP5 IP; LC-MS/MS
Huttlin EL , et al. 2015
HRAS v-Ha-ras Harvey rat sarcoma viral oncogene homolog 3265 P01112 IP/WB
Hirata Y , et al. 2015
HRAS v-Ha-ras Harvey rat sarcoma viral oncogene homolog 3265 P01112 Y2H; GTP hydrolysis assay
Morcos P , et al. 1996
P4HA3 prolyl 4-hydroxylase, alpha polypeptide III 283208 Q7Z4N8 IP; LC-MS/MS
Huttlin EL , et al. 2015
SCN3B sodium channel, voltage-gated, type III, beta subunit 55800 Q9NY72 IP; LC-MS/MS
Huttlin EL , et al. 2015
SDC1 syndecan 1 6382 P18827 Y2H
Hsueh YP , et al. 2001
SDC2 syndecan 2 6383 P34741 Y2H; GST
Hsueh YP , et al. 2001
SDC3 syndecan 3 9672 O75056 Y2H; IP/WB
Hsueh YP , et al. 2001
SDC4 syndecan 4 6385 P31431 Y2H
Hsueh YP , et al. 2001
SPRED1 Sprouty-related, EVH1 domain-containing protein 1 161742 Q7Z699 IP/WB
Pasmant E , et al. 2014
SPRED1 Sprouty-related, EVH1 domain-containing protein 1 161742 Q7Z699 Y2H; IP/WB
Hirata Y , et al. 2015
TBPL1 TBP-like 1 9519 P62380 PIP
Chong JA , et al. 2005
TNFSF13B Tumor necrosis factor ligand superfamily member 13B 10673 Q9Y275 IP; LC-MS/MS
Huttlin EL , et al. 2015
TOP3B topoisomerase (DNA) III beta 8940 O95985 HITS-CLIP
Xu D , et al. 2013
TTC1 tetratricopeptide repeat domain 1 7265 Q99614 Y2H
Murthy AE , et al. 1996
VSIG1 V-set and immunoglobulin domain-containing protein 1 340547 Q86XK7 IP; LC-MS/MS
Huttlin EL , et al. 2015
Actg1 actin, gamma, cytoplasmic 1 11465 P63260 IP; LC-MS/MS
Omrani A , et al. 2015
Cul3 cullin 3 26554 Q9JLV5 IP/WB
Hollstein PE and Cichowski K 2013
Dpysl2 dihydropyrimidinase-like 2 12934 O08553 IP; LC-MS/MS
Omrani A , et al. 2015
FMR1 fragile X mental retardation 1 14265 P35922 HITS-CLIP
Darnell JC , et al. 2011
Grin1 glutamate receptor, ionotropic, NMDA1 (zeta 1) 14810 P35438 Affinity chromatography; IP/WB
Husi H , et al. 2000
Grin2b glutamate receptor, ionotropic, NMDA2B (epsilon 2) 14812 Q01097 Peptide affinity chromatography
Husi H , et al. 2000
Hcn1 hyperpolarization-activated, cyclic nucleotide-gated K+ 1 15165 O88704 IP; LC-MS/MS; IP/WB
Omrani A , et al. 2015
Mbp myelin basic protein 17196 P04370 IP; LC-MS/MS
Omrani A , et al. 2015
MET met proto-oncogene 17295 P16056 IP; LC-MS/MS
Xie Z , et al. 2016
Paics phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase 67054 Q9DCL9 IP; LC-MS/MS
Omrani A , et al. 2015
Tuba1a tubulin, alpha 1A 22142 P68369 IP; LC-MS/MS
Omrani A , et al. 2015
Tubb4a tubulin, beta 4A class IVA 22153 Q9D6F9 IP; LC-MS/MS
Omrani A , et al. 2015
Cask calcium/calmodulin-dependent serine protein kinase (MAGUK family) 29647 Q62915 IP/WB
Hsueh YP , et al. 2001
Ddah1 dimethylarginine dimethylaminohydrolase 1 64157 O08557 GST; Reversed-phase chromatography (RPC)
Tokuo H , et al. 2001
MIB1 mindbomb E3 ubiquitin protein ligase 1 307594 D3ZUV2 Affinity chromatography; LC-MS/MS
Mertz J , et al. 2015
miR16 microRNA mir-16 100313997 N/A Peptide microarray; in silico target prediction
Pan Q , et al. 2014
EHMT1 G9a 30971 Q95RU8 ChIP-Seq
Kramer JM , et al. 2011

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