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Relevance to Autism

In a genome-wide association study of 2165 participants from the Autism Genetic Resource Exchange (AGRE) performed to examine associations between genomic loci and endophenotypes associated with ASDs, it was shown that item 85 (faints, fits, or blackouts referring to an unexplained change in level of consciousness with or without falling or jerking movements of the limbs) on the Autism Diagnostic Interview-Related (ADIR is significantly associated with the NELL1 gene (Connolly et al., 2012).

Molecular Function

This gene encodes a cytoplasmic protein that contains epidermal growth factor (EGF)-like repeats. The encoded heterotrimeric protein may be involved in cell growth regulation and differentiation.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
A genome-wide association study of autism incorporating autism diagnostic interview-revised, autism diagnostic observation schedule, and social res...
ASD
Support
A discovery resource of rare copy number variations in individuals with autism spectrum disorder.
ASD
Support
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN440R001 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN440C001 
 intron_variant 
 rs1429793 
 c.688-13472G>T;c.433-13472G>T;c.604-13472G>T 
  
 Discovery cohort: 2165 participants from AGRE 
 Discovery 
 GEN440C002 
 intron_variant 
 rs1429793 
 c.688-13472G>T;c.433-13472G>T;c.604-13472G>T 
  
 Replication cohort: 1168 families from the Autism Genome Project (AGP) 
 Replication 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
11
Deletion-Duplication
 20
 
11
Deletion
 1
 
11
Deletion
 1
 
11
Deletion
 1
 
11
Duplication
 1
 

Model Summary

A Nell-1 haploinsufficiency mouse model shows autism-like phenotypes, including increased repetitive behavior and decreased social approach. Older mice also show spontaneous seizures. Although expressed in craniofacial tissue, the haploinsufficiency model shows no deformity in cranial structure. Genes that are associated with bipolar disorder, autism spectrum disorder, epilepsy and craniofacial syndromes show changes in alternative splicing. Risperidone, a drug used to treat bipolar disorder and autism, has a restorative effect on repetitive and social behaviors.

References

Type
Title
Author, Year
Primary

M_NELL1_1_KO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: The Nell1^I7R6-6R allele (MGI:3626314) originates from an N-ethyl-N-nitrosourea (ENU)-induced point mutation that truncates an 810 amino acid Nell-1 protein at residue 502. In its homozygous state, the mutation induces neonatal death. Therefore, the Nell1 heterozygote mutant mouse is used as an established loss-of-function model.
Allele Type: Knockout
Strain of Origin: Not specified
Genetic Background: Not specified
ES Cell Line: Not specified
Mutant ES Cell Line:
Model Source: Oak Ridge National Laboratory

M_NELL1_1_KO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Self grooming1
Increased
Description: 64% of the tested 3-month-old Nell-1 heterozygote mice experienced hair loss due to overgrooming repetitive behavior. In contrast, none of the wildtype littermates experienced hair loss. Mild hair loss cases mostly occurred in whiskers, perinasal, and periorbital areas of Nell-1 heterozygote mice, moderate cases exhibited large areas of facial hair loss, and in severe cases, full-body hair loss.
 Observation of hair loss
 3 months
Repetitive digging1
Increased
Description: Nell-1 heterozygote mice buried significantly more marbles than wildtype littermates.
 Marble-burying test
 3 months
Seizures1
Increased
Description: Older Nell-1 heterozygote mice exhibit severe seizure episodes spontaneously and frequently.
 Observation of seizures
 12-18 months
Social approach1
Decreased
Description: In the three-chamber social approach test, Nell-1 heterozygote mice did not prefer a companion over the empty space when wildtype mice engaged more with other mice.
 Three-chamber social approach test
 3 months
Gene expression: alternative splicing1
Abnormal
Description: Comprehensive alternative splicing hunting (CASH) method identified ten genes with significantly different alternative splicing events in the Nell1 heterozygote, most of which have known functions in bipolar, epilepsy, autism, and craniofacial syndromes.
Exp Paradigm: comprehensive alternative splicing hunting (CASH) method
 RNA sequencing
 3 months
Differential gene expression1
Abnormal
Description: The initial global transcriptomic analyses identified 269 differential expressed genes (DEGs) in the Nell-1 heterozygote mouse hippocampus compared to their wildtype counterparts. Among the top 10 downregulated DEGs, several encode functional proteins in the nervous system.
 RNA sequencing
 3 months
Skeletal development: craniofacial1
 No change
 Cranial computerized tomography (CT) scan
 3 months
Anxiety1
 No change
 Open field test
 3 months
Anxiety1
 No change
 Elevated plus maze test
 3 months
Response to novelty1
 No change
 Fear conditioning test
 3 months
Cued or contextual fear conditioning: memory of context1
 No change
 Fear conditioning test
 3 months
Cued or contextual fear conditioning: memory of cue1
 No change
 Fear conditioning test
 3 months
Cued or contextual fear conditioning: trace fear conditioning1
 No change
 Fear conditioning test
 3 months
General locomotor activity: ambulatory activity1
 No change
 Elevated plus maze test
 3 months
General locomotor activity: ambulatory activity1
 No change
 Open field test
 3 months
Motor coordination and balance1
 No change
 Accelerating rotarod test
 3 months
Sensorimotor gating1
 No change
 Prepulse inhibition
 3 months
Startle response: acoustic stimulus1
 No change
 Acoustic startle reflex test
 3 months
 Not Reported:


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
C10ORF88 chromosome 10 open reading frame 88 80007 Q9H8K7 IP; LC-MS/MS
Huttlin EL , et al. 2015
C4ORF48 Neuropeptide-like protein C4orf48 401115 Q5BLP8 IP; LC-MS/MS
Huttlin EL , et al. 2015
CHEK1 checkpoint kinase 1 1111 O14757 IP; LC-MS/MS
Huttlin EL , et al. 2015
EGFL7 EGF-like-domain, multiple 7 51162 Q9UHF1 IP; LC-MS/MS
Huttlin EL , et al. 2015
EMILIN2 elastin microfibril interfacer 2 84034 Q9BXX0 IP; LC-MS/MS
Huttlin EL , et al. 2015
FBLN1 fibulin 1 2192 P23142 IP; LC-MS/MS
Huttlin EL , et al. 2015
FBXO27 F-box only protein 27 126433 Q8NI29 IP; LC-MS/MS
Huttlin EL , et al. 2015
KIAA1712 centrosomal protein 44kDa NM_001040157 Q9C0F1 IP; LC-MS/MS
Huttlin EL , et al. 2015
LAMB2 laminin, beta 2 (laminin S) 3913 P55268 IP; LC-MS/MS
Huttlin EL , et al. 2015
LTBP4 latent transforming growth factor beta binding protein 4 8425 Q8N2S1 IP; LC-MS/MS
Huttlin EL , et al. 2015
MATN2 matrilin 2 4147 O00339 IP; LC-MS/MS
Huttlin EL , et al. 2015
MBD1 methyl-CpG binding domain protein 1 4152 Q9UIS9 Y2H
Sakai Y , et al. 2011
OBSL1 obscurin-like 1 23363 O75147 IP; LC-MS/MS
Huttlin EL , et al. 2015
PFKP phosphofructokinase, platelet 5214 B3KS15 IP; LC-MS/MS
Huttlin EL , et al. 2015
POLRMT polymerase (RNA) mitochondrial (DNA directed) 5442 O00411 IP; LC-MS/MS
Huttlin EL , et al. 2015
PXDN peroxidasin homolog (Drosophila) 7837 Q92626 IP; LC-MS/MS
Huttlin EL , et al. 2015
ROBO3 roundabout guidance receptor 3 64221 Q96MS0 Cell surface binding assay
Jaworski A , et al. 2015
TIMP3 TIMP metallopeptidase inhibitor 3 7078 P35625 IP; LC-MS/MS
Huttlin EL , et al. 2015
TP53RK TP53 regulating kinase 112858 Q96S44 IP; LC-MS/MS
Huttlin EL , et al. 2015
TRMT2B tRNA methyltransferase 2 homolog B (S. cerevisiae) 79979 Q96GJ1 IP; LC-MS/MS
Huttlin EL , et al. 2015
TYW3 tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) 127253 Q6IPR3 IP; LC-MS/MS
Huttlin EL , et al. 2015
ZNF260 zinc finger protein 260 339324 Q3ZCT1 IP; LC-MS/MS
Huttlin EL , et al. 2015

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