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Relevance to Autism

Negr1 knockout mice displayed abnormal neuronal growth, impaired social behavior, reversal learning deficits, and increased susceptibility to pentylenetetrazol (PTZ)-induced seizures (Singh et al., 2018). siRNA-mediated downregulation of Negr1 in mice resulted in abnormal neuronal migration and spine density during cortical development, as well as reduced ultrasonic vocalizations and impaired social interactions; Negr1 knockout mice presented with similar phenotypes (Szczurkowska et al., 2018). A 1p31.1 microdeletion affecting the NEGR1 gene was identified in two siblings presenting with learning disabilities, ADHD, and autistic features (Genovese et al., 2015).

Molecular Function

May be involved in cell-adhesion. May function as a trans-neural growth-promoting factor in regenerative axon sprouting in the mammalian brain

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Neuronal Growth and Behavioral Alterations in Mice Deficient for the Psychiatric Disease-Associated Negr1 Gene.
Support
Neural cell adhesion molecule Negr1 deficiency in mouse results in structural brain endophenotypes and behavioral deviations related to psychiatric...
Support
Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.
MDD
Support
Partial Deletion of Chromosome 1p31.1 Including only the Neuronal Growth Regulator 1 Gene in Two Siblings.
ADHD, autistic features
Recent Recommendation
Identification of common genetic risk variants for autism spectrum disorder.
ASD
Recent Recommendation
NEGR1 and FGFR2 cooperatively regulate cortical development and core behaviours related to autism disorders in mice.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1029R001 
 copy_number_loss 
  
  
 Unknown 
  
 Multiplex 

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN1029C001 
 intron_variant 
 rs1620977 
 c.176+18860T>C 
  
 ASD cohort: 18,381 cases and 27,969 controls from iPSYCH and the Psychiatric Genomic Consortium (PGC). MTAG: 18,381 ASD cases and 27,969 controls, in addition to 135,458 MDD cases and 344,901 controls from Wray et al., 2018 (PMID 29700475) 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Deletion-Duplication
 31
 
1
Deletion
 1
 
1
Deletion
 3
 
1
Deletion
 1
 
1
Duplication
 1
 

Model Summary

NEGR1 knockout mice show abnormalities of EC axons in the hippocampal dentate gyrus including increased numbers of axonal projections to the hilus. NEGR1 knockout mice show no change in neurotransmitter receptor ligand binding densities. However Negr1 knockout mice show altered ligand binding densities to NMDA receptor and muscarinic acetylcholine receptors M1 and M2 in CA1 and CA3. Negr1 KO mice show no change in activity behavior, anxiety-like behavior and sensorimotor gating however, Negr1 KO mice exhibited impaired social behavior, deficits in reversal learning, deficits in the Morris water maze together with increased susceptibility to PTZ-induced seizures (Singh K., Front. Mol. Neuro., 2018).

References

Type
Title
Author, Year
Primary
Neuronal Growth and Behavioral Alterations in Mice Deficient for the Psychiatric Disease-Associated Negr1 Gene.
Additional
NEGR1 and FGFR2 cooperatively regulate cortical development and core behaviours related to autism disorders in mice.

M_NEGR1_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: The mouse Negr1 gene was mutated in embryonic stem (ES) cells by replacement of exon 2, which encodes the first Ig-like domain and the 3' exon/intron splice site, with a neomycin resistance cassette on the C57Bl/6 background.
Allele Type: Targeted knockout
Strain of Origin: C57Bl/6
Genetic Background: C57Bl/6
ES Cell Line:
Mutant ES Cell Line:
Model Source: Lee AWS et al, PlosOne, 2012 (PMID 22844493)

M_NEGR1_2_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: The mouse Negr1 gene was mutated in embryonic stem (ES) cells by replacement of exon 2, which encodes the first Ig-like domain and the 3' exon/intron splice site, with a neomycin resistance cassette on the mixed 129S5/SvEvBrd_C57BL/6 background.
Allele Type: Targeted knockout
Strain of Origin:
Genetic Background: 129S5/SvEvBrd_C57BL/6
ES Cell Line:
Mutant ES Cell Line:
Model Source: Lee AWS et al, PlosOne, 2012 (PMID 22844493)

M_NEGR1_3_KD

Model Type: Genetic
Model Genotype: NA
Mutation: E15.2 timed-pregnant CD1 mice were injected with Negr1 siRNA in Fast Green dye through the uterine wall into the lateral ventricle of each embryo and electroporated into the sub-ventricular zone of the cortex. Co-electroporation of td-Tomato or EGFP was used to visualize transfected neurons and normalize total DNA transfected.
Allele Type: Knockdown
Strain of Origin: CD1
Genetic Background: CD1
ES Cell Line:
Mutant ES Cell Line:
Model Source: Charles River, SRL

M_NEGR1_4_KD

Model Type: Genetic
Model Genotype: NA
Mutation: E15.2 timed-pregnant CD1 mice were injected with Negr1 siRNA in Fast Green dye through the uterine wall into the lateral ventricle of each embryo and electroporated into the visual cortex. Co-electroporation of td-Tomato or EGFP was used to visualize transfected neurons and normalize total DNA transfected.
Allele Type: Knockdown
Strain of Origin: CD1
Genetic Background: CD1
ES Cell Line:
Mutant ES Cell Line:
Model Source: Charles River, SRL

M_NEGR1_5_KD

Model Type: Genetic
Model Genotype: NA
Mutation: E15.2 timed-pregnant CD1 mice were injected with Negr1 siRNA in Fast Green dye through the uterine wall into the lateral ventricle of each embryo and electroporated into the motor and somatosensory cortices. Co-electroporation of td-Tomato or EGFP was used to visualize transfected neurons and normalize total DNA transfected.
Allele Type: Knockdown
Strain of Origin: CD1
Genetic Background: CD1
ES Cell Line:
Mutant ES Cell Line:
Model Source: Charles River, SRL

M_NEGR1_6_KD

Model Type: Genetic
Model Genotype: NA
Mutation: E15.2 timed-pregnant CD1 mice were injected with Negr1 siRNA in Fast Green dye through the uterine wall into the lateral ventricle of each embryo and electroporated into the prefrontal cortex. Co-electroporation of td-Tomato or EGFP was used to visualize transfected neurons and normalize total DNA transfected.
Allele Type: Knockdown
Strain of Origin:
Genetic Background:
ES Cell Line:
Mutant ES Cell Line:
Model Source:

M_NEGR1_7_KO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: The mouse Negr1 gene was mutated in embryonic stem (ES) cells by replacement of exon 2, which encodes the first Ig-like domain and the 3' exon/intron splice site, with a neomycin resistance cassette on the C57Bl/6 background.
Allele Type: Targeted knockout
Strain of Origin: C57Bl/6
Genetic Background: C57Bl/6
ES Cell Line:
Mutant ES Cell Line:
Model Source: Lee AWS et al, PlosOne, 2012 (PMID 22844493)

M_NEGR1_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Axonal architecture: defasciculation1
Increased
Description: Mutants show decreased fasciculation of axons in the molecular layer of the dentate gyrus compared with controls.
Exp Paradigm: To trace entorhinal axons in the brain, dii-crystals were positioned into the upper layers of the ec in fixed transversal tissue blocks. 3 weeks later, diffusion of the neuronal tracer was observed in the major entorhino-hippocampal pathways, the alvear path and the perforant path.
 Immunohistochemistry
 2-3 month
Neuroreceptor levels: glutamate receptors: nmda receptors1
Increased
Description: Mutants show increased nmdar ligand binding in the stratum oriens and stratum radiatum in the ca1 region compared with controls.
Exp Paradigm: NA
 Radioligand binding studies
 2-3 month
Neuronal migration2
Decreased
Description: Negr1 constitutive null mice show a shift in the distribution of cux1-positive upper cortical layer neurons towards layer v in thesomatosensory cortex compared to controls, and ectopic location of cux1 positive cells in cortical layer v.
Exp Paradigm: NA
 Immunohistochemistry
 P7
Anatomical projections and connectivity1
Increased
Description: Mutants show dii labeled axons crossing the inner molecular layer and approaching and traversing beyond the granular cell layer into the hilar region compared with controls.
Exp Paradigm: To trace entorhinal axons in the brain, dii-crystals were positioned into the upper layers of the ec in fixed transversal tissue blocks. 3 weeks later, diffusion of the neuronal tracer was observed in the major entorhino-hippocampal pathways, the alvear path and the perforant path.
 Immunohistochemistry
 2-3 month
Neuroreceptor levels: acetylcholine1
Increased
Description: Mutants show slightly increased mach m1r ligand binding in ca1 stratum radiatum and ca3 pyramidal cell layer compared with controls.
Exp Paradigm: NA
 Radioligand binding studies
 2-3 month
Dendritic architecture: spine density2
Decreased
Description: Negr1 constitutive null mice show a decrease in spine density compared with controls.
Exp Paradigm: NA
 Immunohistochemistry
 P7
Neuroreceptor levels: acetylcholine1
Decreased
Description: Mutants show slightly decreased acetylcholine mr2 ligand binding in ca1 stratum oriens compared with controls.
Exp Paradigm: NA
 Radioligand binding studies
 2-3 month
Cortical thickness2
Increased
Description: Negr1 constitutive null mice show an increase in cux1 positive layer ii-iv thickness compared with controls.
Exp Paradigm: NA
 Immunohistochemistry
 P7
Neuroreceptor levels: acetylcholine1
Decreased
Description: Mutants show a decrease in acetylcholine m2r receptor levelsin the hippocampus compared with controls.
Exp Paradigm: NA
 Western blot
 2-3 month
Self grooming: perseveration2
Increased
Description: Negr1 constitutive null mice show increased self grooming compared with controls.
Exp Paradigm: NA
 Grooming behavior assessments
 P20-25
Seizure threshold1
Decreased
Description: Mutants show increased susceptibility to chemically (ptz) induced seizures compared with controls with shorter latency to stage 1 (hypoactivity), a trend towards shorter latency to stage 2 (head nodding), stage 3 (forelimb clonus), and stage 4 (generalized seizures), an increase in the percentage of mice exhibiting seizures, and an increase in the seizure score calculated over all four stages.
Exp Paradigm: Mouse behavior was monitored for 30 min aftersingle administration of ptz
 Observation of chemically induced seizures
 2 months
Juvenile play2
Decreased
Description: Negr1 constitutive null mice show decrease in social sniffing during juvenile play with an unfamiliar mouse compared with controls.
Exp Paradigm: NA
 Reciprocal social interaction test
 P20-25
Ultrasonic vocalization: isolation induced2
Decreased
Description: Negr1 constitutive null mice show a decrease in ultrasonic vocalizations compared with controls.
Exp Paradigm: NA
 Monitoring ultrasonic vocalizations
 P4
Protein binding2
Decreased
Description: Mutants show no co-immunoprecipitation of fgfr2 when negr1 is immunoprecipitated compared to wildtype that show co-immunoprecipitation of fgfr2 when negr1 is immunoprecipitated from brain lysates.
Exp Paradigm: NA
 Co-immunoprecipitation
 Adult
Anxiety1
 No change
 Open field test
 2-3 month
Anxiety1
 No change
 Elevated plus maze test
 2-3 month
General locomotor activity1
 No change
 Open field test
 2-3 month
General locomotor activity: ambulatory activity1
 No change
 Open field test
 2-3 month
Neuroreceptor levels: acetylcholine1
 No change
 Western blot
 2-3 month
Pain or nociception: thermal2
 No change
 Hot plate test
 P9
Startle response: acoustic stimulus1
 No change
 Prepulse inhibition
 2-3 month
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Social behavior

M_NEGR1_2_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Social approach1
Decreased
Description: Mutants spent less time in the chamber with the unfamiliar mouse compared with controls.
Exp Paradigm: NA
 Three-chamber social approach test
 2-3 month
Spatial working memory1
Decreased
Description: Mutants show decreased ability to find the hidden platform in the first three trials compared with controls but performed similar to controls on the fourth trial, indicating mutants are slow learners.
Exp Paradigm: NA
 Morris water maze test
 2 months
Cognitive flexibility1
Decreased
Description: Mutants show decrease in time spent in the changed quadrant after reversal training compared with controls, indicating mutants have impaired relearning capacity.
Exp Paradigm: NA
 Morris water maze test
 2 months
Spatial reference memory1
 No change
 Morris water maze test
 2 months
Social dominance1
 No change
 Tube test of social dominance
 2-3 month
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory

M_NEGR1_3_KD

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Neuronal specification1
Decreased
Description: Negr1 knockdown neurons that were stuck in layer v at p7 retained markers of the upper layers ii/iii (cux1) indicating mis-specification of cortical layer specific neurons.
Exp Paradigm: NA
 NA
 P7
Neuronal migration1
Decreased
Description: Negr1 knockdown neurons were mostly located in the ventricular zone and intermediate zone, with only a small percentage reaching the cortical plate at e18 whereas control scrambled sirna cells were distributed across the ventricular zone, intermediate zone, and cortical plate, indicating reduced radial migration of negr1 knockdown neurons. negr1 knockdown neurons were stuck in layer v and did not cross the border between layer iv/v by p7 or p35, whereas most control sirna transfected neurons migrated into layer ii/ii. negr1 knockdown neurons of upper cortical layers accumulated in lower subregions compared to controls.
Exp Paradigm: NA
 Immunohistochemistry
 E18, p7, 1.2 months
Dendritic architecture: dendritic tree complexity1
Decreased
Description: Negr1 knockdown neurons in the somatosensory cortex and ectopic neurons stuck in layer v show decrease in the number of dendritic branches compared to controls.
Exp Paradigm: NA
 Sholl analysis
 P7
Dendritic architecture: dendritic length1
Decreased
Description: Negr1 knockdown neurons in layer ii/iii of the somatosensory cortex and ectopic neurons stuck in layer v show decrease in dendritic length compared to controls.
Exp Paradigm: NA
 Sholl analysis
 P7
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_NEGR1_4_KD

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Neuronal migration1
Decreased
Description: Negr1 knockdown neurons were ectopically located in the visual cortex and mis-positioned in layer ii/iii compared to controls.
Exp Paradigm: NA
 Immunohistochemistry
 P7, p25
Dendritic architecture: spine density1
Decreased
Description: Negr1 knockdown neurons with electroporation targeting neurons in the visual cortex show decrease in spine density compared to controls.
Exp Paradigm: NA
 Immunofluorescence staining
 P20-25
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_NEGR1_5_KD

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Neuronal migration1
Decreased
Description: Negr1 knockdown neurons in the motor and somatosensory cortices were ectopically located in layer v compared to controls. defect is neuronal migration was higher in the somatosensory cortex than in the motor cortex (wildtype negr1 expression is stronger in the somatosensory and visual cortices than in the motor cortex).
Exp Paradigm: NA
 Immunohistochemistry
 P7, p25
Dendritic architecture: spine density1
Decreased
Description: Negr1 knockdown neurons with electroporation targeting layer ii/iii neurons in the somatosensory cortex show decrease in spine density compared to controls.
Exp Paradigm: NA
 Immunofluorescence staining
 P20-25
Pain or nociception: thermal1
Decreased
Description: Pups transfected with negr1 sirna in the somatosensory cortex show increased latency in removing paw from hot plate compared to controls.
Exp Paradigm: NA
 Hot plate test
 P9
Juvenile play1
Decreased
Description: Negr1 downregulated mice show decreased social interaction during juvenile play compared to controls.
Exp Paradigm: NA
 Reciprocal social interaction test
 P20-25
Ultrasonic vocalization: isolation induced1
Decreased
Description: Pups transfected with negr1 sirna into the somatosensory cortex show decrease in ultrasonic vocalizations compared to controls.
Exp Paradigm: NA
 Monitoring ultrasonic vocalizations
 P4
Self grooming: perseveration1
 No change
 Grooming behavior assessments
 P20-25
 Not Reported: Circadian sleep/wake cycle, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Seizure

M_NEGR1_6_KD

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Ultrasonic vocalization: isolation induced1
 No change
 Monitoring ultrasonic vocalizations
 P4
Neuronal migration1
 No change
 Immunohistochemistry
 P7, p25
 Not Reported: Circadian sleep/wake cycle, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_NEGR1_7_KO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Self grooming: perseveration1
Increased
Description: Negr1 constitutive null het mice show increased self grooming compared with controls.
Exp Paradigm: NA
 Grooming behavior assessments
 P20-25
Pain or nociception: thermal1
Decreased
Description: Negr1 constitutive null het mice show increase in latency to remove paw from hot plate compared with controls.
Exp Paradigm: NA
 Hot plate test
 P9
Juvenile play1
Decreased
Description: Negr1 constitutive null het mice show decrease in social sniffing during juvenile play with an unfamiliar mouse compared with controls.
Exp Paradigm: NA
 Reciprocal social interaction test
 P20-25
Ultrasonic vocalization: isolation induced1
 No change
 Monitoring ultrasonic vocalizations
 P4
 Not Reported: Circadian sleep/wake cycle, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Seizure

 

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