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Relevance to Autism

A de novo potentially damaging missense variant in the NCOR1 gene was identified in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2012); a de novo splice-site variant and paternally-inherited potentially damaging missense variant in this gene were identified in ASD probands from the Autism Clinical and Genetic Resources in China (ACGC) cohort (Wang et al., 2016). Interaction of the NCoR/SMRT co-repressor with MECP2 is abolished by mutations associated with Rett syndrome (Lyst et al., 2013).

Molecular Function

This gene encodes a protien that mediates transcriptional repression by certain nuclear receptors and is part of a complex which promotes histone deacetylation and the formation of repressive chromatin structures which may impede the access of basal transcription factors.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
De novo gene disruptions in children on the autistic spectrum.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Rare variants in the outcome of social skills group training for autism
ASD
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
ID
Support
Haploinsufficiency of NCOR1 associated with autism spectrum disorder, scoliosis, and abnormal palatogenesis.
ASD
Support
ASD
DD, ID
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Rett syndrome mutations abolish the interaction of MeCP2 with the NCoR/SMRT co-repressor.
Recent Recommendation
Loss of function of NCOR1 and NCOR2 impairs memory through a novel GABAergic hypothalamus-CA3 projection.
DD/ID, epilepsy/seizures
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN855R001 
 missense_variant 
 c.1705C>T 
 p.Pro569Ser 
 De novo 
  
 Simplex 
 GEN855R002 
 splice_site_variant 
 c.3449-1G>C 
 p.? 
 De novo 
  
  
 GEN855R003 
 missense_variant 
 c.3122C>T 
 p.Pro1025Leu 
 Familial 
 Paternal 
  
 GEN855R004 
 splice_site_variant 
 c.1855+1G>T 
  
 De novo 
  
  
 GEN855R005 
 missense_variant 
 c.2930G>A 
 p.Arg977Gln 
 Familial 
 Paternal 
 Simplex 
 GEN855R006 
 missense_variant 
 c.5849G>A 
 p.Arg1950His 
 Familial 
 Maternal 
 Simplex 
 GEN855R007 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN855R008 
 splice_site_variant 
 c.1855+2T>G 
  
 De novo 
  
  
 GEN855R009 
 splice_site_variant 
 c.3449-1G>C 
  
 Unknown 
  
  
 GEN855R010 
 splice_site_variant 
 c.6897A>G 
 p.Ala2299%3D 
 Unknown 
  
  
 GEN855R011 
 stop_gained 
 c.5020C>T 
 p.Pro1674Ser 
 Unknown 
  
 Simplex 
 GEN855R012 
 missense_variant 
 c.3899G>A 
 XP_005256923.1:p.Ser1300Asn 
 Unknown 
  
  
 GEN855R013 
 missense_variant 
 c.6799C>T 
 XP_005256923.1:p.Arg2267Cys 
 Unknown 
  
  
 GEN855R014 
 missense_variant 
 c.749C>T 
 p.Ala250Val 
 Unknown 
  
  
 GEN855R015 
 missense_variant 
 c.644A>T 
 p.Lys215Ile 
 Unknown 
  
  
 GEN855R016 
 missense_variant 
 c.361C>T 
 p.Arg121Cys 
 Unknown 
  
  
 GEN855R017 
 missense_variant 
 c.3688C>T 
 XP_005256923.1:p.Arg1230Trp 
 Unknown 
  
  
 GEN855R018 
 missense_variant 
 c.6897G>C 
 XP_005256923.1:p.Lys2299Asn 
 Unknown 
  
  
 GEN855R019 
 missense_variant 
 c.6897G>C 
 XP_005256923.1:p.Lys2299Asn 
 Unknown 
  
  
 GEN855R020 
 missense_variant 
 c.6391C>T 
 XP_005256923.1:p.Arg2131Trp 
 Unknown 
  
  
 GEN855R021 
 missense_variant 
 c.6893G>A 
 XP_005256923.1:p.Arg2298His 
 Unknown 
  
  
 GEN855R022 
 missense_variant 
 c.5467C>T 
 XP_005256923.1:p.Arg1823Trp 
 Unknown 
  
  
 GEN855R023 
 missense_variant 
 c.4492C>T 
 p.Arg1498Trp 
 Unknown 
  
  
 GEN855R024 
 missense_variant 
 c.6806C>T 
 XP_005256923.1:p.Pro2269Leu 
 Unknown 
  
  
 GEN855R025 
 splice_site_variant 
 c.7387+2T>G 
 p.? 
 Unknown 
  
  
 GEN855R026 
 frameshift_variant 
 c.5235del 
 p.Ile1745MetfsTer33 
 Unknown 
  
  
 GEN855R027 
 splice_site_variant 
 c.3699A>G 
 p.Gly1233%3D 
 Unknown 
  
  
 GEN855R028 
 splice_site_variant 
 c.2899-1G>A 
 p.? 
 Unknown 
  
  
 GEN855R029 
 missense_variant 
 c.3688C>T 
 XP_005256923.1:p.Arg1230Trp 
 Unknown 
  
  
 GEN855R030 
 missense_variant 
 c.6892C>T 
 XP_005256923.1:p.Arg2298Cys 
 Unknown 
  
  
 GEN855R031 
 missense_variant 
 c.6892C>T 
 XP_005256923.1:p.Arg2298Cys 
 Unknown 
  
  
 GEN855R032 
 missense_variant 
 c.6800G>A 
 XP_005256923.1:p.Arg2267His 
 Unknown 
  
  
 GEN855R033 
 missense_variant 
 c.6800G>A 
 XP_005256923.1:p.Arg2267His 
 Unknown 
  
  
 GEN855R034 
 missense_variant 
 c.5135G>A 
 XP_005256923.1:p.Arg1712His 
 Unknown 
  
  
 GEN855R035 
 missense_variant 
 c.5135G>A 
 XP_005256923.1:p.Arg1712His 
 Unknown 
  
  
 GEN855R036 
 missense_variant 
 c.4495C>T 
 XP_005256923.1:p.Arg1499Cys 
 Unknown 
  
  
 GEN855R037 
 missense_variant 
 c.6923C>T 
 XP_005256923.1:p.Ser2308Phe 
 Unknown 
  
  
 GEN855R038 
 missense_variant 
 c.6550C>T 
 XP_005256923.1:p.Arg2184Cys 
 Unknown 
  
  
 GEN855R039 
 missense_variant 
 c.5492G>A 
 XP_005256923.1:p.Arg1831Gln 
 Unknown 
  
  
 GEN855R040 
 missense_variant 
 c.3526C>T 
 XP_005256923.1:p.Arg1176Trp 
 Unknown 
  
  
 GEN855R041 
 missense_variant 
 c.4586G>A 
 XP_005256923.1:p.Arg1529His 
 Unknown 
  
  
 GEN855R042 
 missense_variant 
 c.6182G>T 
 XP_005256923.1:p.Ser2061Ile 
 Unknown 
  
  
 GEN855R043 
 missense_variant 
 c.6182G>T 
 XP_005256923.1:p.Ser2061Ile 
 Unknown 
  
  
 GEN855R044 
 missense_variant 
 c.7175G>A 
 XP_005256923.1:p.Arg2392Gln 
 Unknown 
  
  
 GEN855R045 
 missense_variant 
 c.2876G>A 
 XP_005256923.1:p.Arg959Gln 
 Unknown 
  
  
 GEN855R046 
 missense_variant 
 c.4021G>A 
 XP_005256923.1:p.Gly1341Arg 
 Unknown 
  
  
 GEN855R047 
 missense_variant 
 c.667G>C 
 p.Val223Leu 
 Unknown 
  
  
 GEN855R048 
 missense_variant 
 c.340G>C 
 p.Val114Leu 
 Unknown 
  
  
 GEN855R049 
 missense_variant 
 c.667G>C 
 p.Val223Leu 
 Unknown 
  
  
 GEN855R050 
 missense_variant 
 c.6806C>T 
 XP_005256923.1:p.Pro2269Leu 
 Unknown 
  
  
 GEN855R051 
 missense_variant 
 c.4592G>A 
 XP_005256923.1:p.Arg1531Gln 
 Unknown 
  
  
 GEN855R052 
 missense_variant 
 c.4592G>A 
 XP_005256923.1:p.Arg1531Gln 
 Unknown 
  
  
 GEN855R053 
 missense_variant 
 c.6761A>G 
 p.His2254Arg 
 Unknown 
  
  
 GEN855R054 
 synonymous_variant 
 c.3243G>A 
 p.Pro1081%3D 
 De novo 
  
  
 GEN855R055 
 splice_region_variant 
 c.436-8C>A 
  
 De novo 
  
  
 GEN855R056 
 missense_variant 
 c.395C>T 
 p.Pro132Leu 
 De novo 
  
 Simplex 
 GEN855R057 
 missense_variant 
 c.229C>G 
 p.Pro77Ala 
 De novo 
  
 Simplex 
 GEN855R058 
 missense_variant 
 c.1805C>T 
 p.Ala602Val 
 De novo 
  
 Simplex 
 GEN855R059 
 missense_variant 
 c.5940C>A 
 p.Ser1980Arg 
 Familial 
 Paternal 
 Simplex 
 GEN855R060 
 frameshift_variant 
 c.4243del 
 p.Arg1415ValfsTer13 
 Familial 
 Maternal 
 Simplex 
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Deletion-Duplication
 63
  construct
17
Deletion-Duplication
 36
 
17
Duplication
 7
 
17
Duplication
 1
 
17
Duplication
 1
 
17
Duplication
 2
 
17
Duplication
 1
 
17
Duplication
 3
 
17
Duplication
 1
 

Model Summary

Smr mutants showed a habituation deficit. Smr suppresess ommatidial disorganization in MECP2 mutants.

References

Type
Title
Author, Year
Primary
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.

F_SMR_1_KD_GAL4:UAS;RNAI-VDRC106701

Model Type: Genetic
Model Genotype: Wild type
Mutation: Smr-Gal4 driver line expressing UAS-Smr-RNAi.
Allele Type: Loss-of-function
Strain of Origin: Not reported
Genetic Background: Not reported
ES Cell Line:
Mutant ES Cell Line:
Model Source:

F_SMR_1_KD_GAL4:UAS;RNAI-VDRC106701

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Habituation to aversive stimuli1
Decreased
Description: When challenged in the light-off jump paradigm, the mutants showed a habituation deficit compared to controls.
Exp Paradigm: Habituation was measured in number of trials to reach no-jump criterion.
 Light-off startle jump
 adult stage
Startle response1
 No change
 Light-off startle jump
 adult stage
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

 

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