Summary Statistics:
ASD Reports: 12
Recent Reports: 1
Annotated variants: 60
Associated CNVs: 9
Evidence score: 4
Gene Score: 2
Relevance to Autism
A de novo potentially damaging missense variant in the NCOR1 gene was identified in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2012); a de novo splice-site variant and paternally-inherited potentially damaging missense variant in this gene were identified in ASD probands from the Autism Clinical and Genetic Resources in China (ACGC) cohort (Wang et al., 2016). Interaction of the NCoR/SMRT co-repressor with MECP2 is abolished by mutations associated with Rett syndrome (Lyst et al., 2013).
Molecular Function
This gene encodes a protien that mediates transcriptional repression by certain nuclear receptors and is part of a complex which promotes histone deacetylation and the formation of repressive chromatin structures which may impede the access of basal transcription factors.
References
Primary
De novo gene disruptions in children on the autistic spectrum.
ASD
Support
De novo genic mutations among a Chinese autism spectrum disorder cohort.
ASD
Support
Rett syndrome mutations abolish the interaction of MeCP2 with the NCoR/SMRT co-repressor.
Support
Integrating de novo and inherited variants in 42
ASD
Support
Rare variants in the outcome of social skills group training for autism
ASD
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
Haploinsufficiency of NCOR1 associated with autism spectrum disorder, scoliosis, and abnormal palatogenesis.
ASD
Recent Recommendation
Loss of function of NCOR1 and NCOR2 impairs memory through a novel GABAergic hypothalamus-CA3 projection.
DD/ID, epilepsy/seizures
ASD
GEN855R001
missense_variant
c.1705C>T
p.Pro569Ser
De novo
Simplex
GEN855R002
splice_site_variant
c.3449-1G>C
p.?
De novo
GEN855R003
missense_variant
c.3122C>T
p.Pro1025Leu
Familial
Paternal
GEN855R004
splice_site_variant
c.1855+1G>T
De novo
GEN855R005
missense_variant
c.2930G>A
p.Arg977Gln
Familial
Paternal
Simplex
GEN855R006
missense_variant
c.5849G>A
p.Arg1950His
Familial
Maternal
Simplex
GEN855R007
copy_number_loss
De novo
GEN855R008
splice_site_variant
c.1855+2T>G
De novo
GEN855R009
splice_site_variant
c.3449-1G>C
Unknown
GEN855R010
splice_site_variant
c.6897A>G
p.Ala2299%3D
Unknown
GEN855R011
stop_gained
c.5020C>T
p.Pro1674Ser
Unknown
Simplex
GEN855R012
missense_variant
c.3899G>A
XP_005256923.1:p.Ser1300Asn
Unknown
GEN855R013
missense_variant
c.6799C>T
XP_005256923.1:p.Arg2267Cys
Unknown
GEN855R014
missense_variant
c.749C>T
p.Ala250Val
Unknown
GEN855R015
missense_variant
c.644A>T
p.Lys215Ile
Unknown
GEN855R016
missense_variant
c.361C>T
p.Arg121Cys
Unknown
GEN855R017
missense_variant
c.3688C>T
XP_005256923.1:p.Arg1230Trp
Unknown
GEN855R018
missense_variant
c.6897G>C
XP_005256923.1:p.Lys2299Asn
Unknown
GEN855R019
missense_variant
c.6897G>C
XP_005256923.1:p.Lys2299Asn
Unknown
GEN855R020
missense_variant
c.6391C>T
XP_005256923.1:p.Arg2131Trp
Unknown
GEN855R021
missense_variant
c.6893G>A
XP_005256923.1:p.Arg2298His
Unknown
GEN855R022
missense_variant
c.5467C>T
XP_005256923.1:p.Arg1823Trp
Unknown
GEN855R023
missense_variant
c.4492C>T
p.Arg1498Trp
Unknown
GEN855R024
missense_variant
c.6806C>T
XP_005256923.1:p.Pro2269Leu
Unknown
GEN855R025
splice_site_variant
c.7387+2T>G
p.?
Unknown
GEN855R026
frameshift_variant
c.5235del
p.Ile1745MetfsTer33
Unknown
GEN855R027
splice_site_variant
c.3699A>G
p.Gly1233%3D
Unknown
GEN855R028
splice_site_variant
c.2899-1G>A
p.?
Unknown
GEN855R029
missense_variant
c.3688C>T
XP_005256923.1:p.Arg1230Trp
Unknown
GEN855R030
missense_variant
c.6892C>T
XP_005256923.1:p.Arg2298Cys
Unknown
GEN855R031
missense_variant
c.6892C>T
XP_005256923.1:p.Arg2298Cys
Unknown
GEN855R032
missense_variant
c.6800G>A
XP_005256923.1:p.Arg2267His
Unknown
GEN855R033
missense_variant
c.6800G>A
XP_005256923.1:p.Arg2267His
Unknown
GEN855R034
missense_variant
c.5135G>A
XP_005256923.1:p.Arg1712His
Unknown
GEN855R035
missense_variant
c.5135G>A
XP_005256923.1:p.Arg1712His
Unknown
GEN855R036
missense_variant
c.4495C>T
XP_005256923.1:p.Arg1499Cys
Unknown
GEN855R037
missense_variant
c.6923C>T
XP_005256923.1:p.Ser2308Phe
Unknown
GEN855R038
missense_variant
c.6550C>T
XP_005256923.1:p.Arg2184Cys
Unknown
GEN855R039
missense_variant
c.5492G>A
XP_005256923.1:p.Arg1831Gln
Unknown
GEN855R040
missense_variant
c.3526C>T
XP_005256923.1:p.Arg1176Trp
Unknown
GEN855R041
missense_variant
c.4586G>A
XP_005256923.1:p.Arg1529His
Unknown
GEN855R042
missense_variant
c.6182G>T
XP_005256923.1:p.Ser2061Ile
Unknown
GEN855R043
missense_variant
c.6182G>T
XP_005256923.1:p.Ser2061Ile
Unknown
GEN855R044
missense_variant
c.7175G>A
XP_005256923.1:p.Arg2392Gln
Unknown
GEN855R045
missense_variant
c.2876G>A
XP_005256923.1:p.Arg959Gln
Unknown
GEN855R046
missense_variant
c.4021G>A
XP_005256923.1:p.Gly1341Arg
Unknown
GEN855R047
missense_variant
c.667G>C
p.Val223Leu
Unknown
GEN855R048
missense_variant
c.340G>C
p.Val114Leu
Unknown
GEN855R049
missense_variant
c.667G>C
p.Val223Leu
Unknown
GEN855R050
missense_variant
c.6806C>T
XP_005256923.1:p.Pro2269Leu
Unknown
GEN855R051
missense_variant
c.4592G>A
XP_005256923.1:p.Arg1531Gln
Unknown
GEN855R052
missense_variant
c.4592G>A
XP_005256923.1:p.Arg1531Gln
Unknown
GEN855R053
missense_variant
c.6761A>G
p.His2254Arg
Unknown
GEN855R054
synonymous_variant
c.3243G>A
p.Pro1081%3D
De novo
GEN855R055
splice_region_variant
c.436-8C>A
De novo
GEN855R056
missense_variant
c.395C>T
p.Pro132Leu
De novo
Simplex
GEN855R057
missense_variant
c.229C>G
p.Pro77Ala
De novo
Simplex
GEN855R058
missense_variant
c.1805C>T
p.Ala602Val
De novo
Simplex
GEN855R059
missense_variant
c.5940C>A
p.Ser1980Arg
Familial
Paternal
Simplex
GEN855R060
frameshift_variant
c.4243del
p.Arg1415ValfsTer13
Familial
Maternal
Simplex
No Common Variants Available
17
Deletion-Duplication
63
17
Deletion-Duplication
36
Summary Statistics:
# of Reports: 1
# of Models: 1
External Links
Model Summary
Smr mutants showed a habituation deficit. Smr suppresess ommatidial disorganization in MECP2 mutants.
References
Primary
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
Model Type:
Genetic
Model Genotype:
Wild type
Mutation:
Smr-Gal4 driver line expressing UAS-Smr-RNAi.
Allele Type: Loss-of-function
Strain of Origin: Not reported
Genetic Background: Not reported
ES Cell Line:
Mutant ES Cell Line:
Model Source:
Habituation to aversive stimuli1
Decreased
View More
Description: When challenged in the light-off jump paradigm, the mutants showed a habituation deficit compared to controls.
Exp Paradigm: Habituation was measured in number of trials to reach no-jump criterion.
Light-off startle jump
adult stage
No change
Light-off startle jump
adult stage
Not Reported:
Circadian sleep/wake cycle, Communications, Developmental profile, Immune response, Learning & memory, Maternal behavior, Molecular profile, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior
No Interactions Available